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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Oct 05

Fold library idPDB HeaderMoleculeTitle
c4jh1B_ transferase Chain: B: metallothiol transferase fosb; crystal structure of fosb from bacillus cereus with zinc and sulfate2 at 1.55 a resolution -sad phasing
c4hcwC_ transferase Chain: C: thiaminase-i; structure of a eukaryotic thiaminase-i
c4m87B_ oxidoreductase Chain: B: enoyl-[acyl-carrier-protein] reductase [nadh]; crystal structure of enoyl-acyl carrier protein reductase (fabi) from2 neisseria meningitidis in complex with nad+
c4lkuB_ transport protein Chain: B: large-conductance mechanosensitive channel; structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
c4l9oA_ protein transport Chain: A: protein transport protein sec13, copii coat assembly crystal structure of the sec13-sec16 blade-inserted complex from2 pichia pastoris
c4lfhD_ immune system Chain: D: 9c2 tcr delta chain; crystal structure of 9c2 tcr
c4h73E_ oxidoreductase Chain: E: aldehyde dehydrogenase; thermostable aldehyde dehydrogenase from pyrobaculum sp. complexed2 with nadp+
c3vylB_ isomerase Chain: B: l-ribulose 3-epimerase; structure of l-ribulose 3-epimerase
c3zdrA_ oxidoreductase Chain: A: acetaldehyde dehydrogenase (acetylating); structure of the alcohol dehydrogenase (adh) domain of a2 bifunctional adhe dehydrogenase from geobacillus3 thermoglucosidasius ncimb 11955
c4mtnA_ transcription regulator Chain: A: transcription termination factor nusa; crystal structure of transcription termination factor nusa from2 planctomyces limnophilus dsm 3776
c4m0jA_ transferase Chain: A: d-amino acid aminotransferase; crystal structure of a d-amino acid aminotransferase from burkholderia2 thailandensis e264
c4il1A_ hydrolase Chain: A: calmodulin, calcineurin subunit b type 1, serine/threonine- crystal structure of the rat calcineurin
c4m9cC_ transferase Chain: C: bacterial transferase hexapeptide (three repeats) family weei from acinetobacter baumannii aye
c4bipA_ virus Chain: A: vp1; homology model of coxsackievirus a7 (cav7) full capsid2 proteins.
c4m98A_ transferase Chain: A: pilin glycosylation protein; acetyltransferase domain of pglb from neisseria gonorrhoeae fa1090
c4fmyE_ viral protein Chain: E: dna stabilization protein; hk620 tail needle crystal form i
c4murA_ hydrolase Chain: A: d,d-dipeptidase/d,d-carboxypeptidase; crystal structure of vancomycin resistance d,d-dipeptidase/d,d-2 pentapeptidase vanxyc d59s mutant
c4bndB_ isomerase Chain: B: alpha-phosphoglucomutase; structure of an atypical alpha-phosphoglucomutase similar to2 eukaryotic phosphomannomutases
c4c53A_ viral protein Chain: A: pre-glycoprotein polyprotein gp complex; crystal structure of guanarito virus gp2 in the post-fusion2 conformation
c4hqjE_ hydrolase/transport protein Chain: E: na+/k+ atpase gamma subunit transcript variant a; crystal structure of na+,k+-atpase in the na+-bound state
c2lz4B_ membrane protein Chain: B: amyloid beta a4 protein; solution nmr structure of transmembrane domain of amyloid precursor2 protein v44m
c4b62A_ membrane protein Chain: A: tssl1; the structure of the cell wall anchor of the t6ss from pseudomonas2 aeruginosa
c4m7tA_ metal binding protein Chain: A: btrn; crystal structure of btrn in complex with adomet and 2-doia
c3vyjA_ carbohydrate binding protein Chain: A: c-type lectin domain family 4, member a4; crystal structure of c-type lectin domain of murine dendritic cell2 inhibitory receptor 2 (apo form)
c4c7qA_ rna binding protein Chain: A: rna-binding glycine-rich protein; solution structure of the nt. gr-rbp1 rrm domain
c4lkuE_ transport protein Chain: E: large-conductance mechanosensitive channel; structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
c4ix5B_ transferase Chain: B: msstt7d protein; crystal structure of a stt7 homolog from micromonas algae in complex2 with amp-pnp
c4jprA_ viral protein Chain: A: aslv fusion tm; structure of the aslv fusion subunit core
c4lfhG_ immune system Chain: G: 9c2 tcr gamma chain; crystal structure of 9c2 tcr
c4kbmA_ transferase/transcription Chain: A: dna-directed rna polymerase subunit beta; structure of the mtb card/rnap beta subunit b1-b2 domains complex
c4kdwA_ cell adhesion Chain: A: antifreeze protein; crystal structure of a bacterial immunoglobulin-like domain from the2 m. primoryensis ice-binding adhesin
c4kbmB_ transferase/transcription Chain: B: rna polymerase-binding transcription factor card; structure of the mtb card/rnap beta subunit b1-b2 domains complex
c2lz3B_ membrane protein Chain: B: amyloid beta a4 protein; solution nmr structure of transmembrane domain of amyloid precursor2 protein wt
c4c13A_ ligase Chain: A: udp-n-acetylmuramoyl-l-alanyl-d-glutamate--l-lysine x-ray crystal structure of staphylococcus aureus mure with2 udp-murnac-ala-glu-lys
c4k3aA_ hydrolase Chain: A: glycoside hydrolase family 81 endo-beta-1,3-glucanase; the structure of a glycoside hydrolase family 81 endo-[beta]-1,3-2 glucanase
c4hqjG_ hydrolase/transport protein Chain: G: na+/k+ atpase gamma subunit transcript variant a; crystal structure of na+,k+-atpase in the na+-bound state
c4lkuC_ transport protein Chain: C: large-conductance mechanosensitive channel; structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
c4muzA_ lyase/lyase inhibitor Chain: A: orotidine 5'-phosphate decarboxylase; crystal structure of orotidine 5'-monophosphate decarboxylase from2 achaeoglobus fulgidus complexed with inhibitor bmp
c4bryB_ cell cycle Chain: B: multicilin; the idas:geminin heterodimeric parallel coiled-coil
c4eckB_ transferase, oxidoreductase Chain: B: bifunctional dihydrofolate reductase-thymidylate synthase; crystal structure of the toxoplasma gondii ts-dhfr
c4mveB_ structural genomics, unknown function Chain: B: uncharacterized protein; crystal structure of tcur_1030 protein from thermomonospora curvata
c4m6tA_ transcription regulator Chain: A: rna polymerase ii-associated factor 1 homolog, linker, rna structure of human paf1 and leo1 complex
c4lkuD_ transport protein Chain: D: large-conductance mechanosensitive channel; structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
c4j20B_ oxidoreductase Chain: B: cytochrome c-555; x-ray structure of the cytochrome c-554 from chlorobaculum tepidum
c4mruA_ sugar binding protein Chain: A: susd homolog; crystal structure of a susd homolog (bt1281) from bacteroides2 thetaiotaomicron vpi-5482 at 1.90 a resolution
c2lz3A_ membrane protein Chain: A: amyloid beta a4 protein; solution nmr structure of transmembrane domain of amyloid precursor2 protein wt
c4lkuA_ transport protein Chain: A: large-conductance mechanosensitive channel; structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
c2lz4A_ membrane protein Chain: A: amyloid beta a4 protein; solution nmr structure of transmembrane domain of amyloid precursor2 protein v44m


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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