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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Sep 28

Fold library idPDB HeaderMoleculeTitle
c4btjB_ transferase Chain: B: tau-tubulin kinase 1; ttbk1 in complex with atp
c4kgoB_ immune system Chain: B: bpi fold-containing family a member 1; crystal structure of double leucine to methionine mutant human splunc-2 1 lacking the secretion signal sequence
c4leuA_ rna binding protein Chain: A: pentatricopeptide repeat-containing protein at3g46870; crystal structure of tha8-like protein from arabidopsis thaliana
c4gdxA_ hydrolase Chain: A: gamma-glutamyltranspeptidase 1 heavy chain; crystal structure of human gamma-glutamyl transpeptidase--glutamate2 complex
c4mo9A_ solute-binding protein Chain: A: periplasmic binding protein; crystal structure of troa-like periplasmic binding protein fepb from2 veillonella parvula
c4jzlA_ apoptosis, transport protein Chain: A: b-cell receptor-associated protein 31; crystal structure of bap31 vded at alkaline ph
c4krhB_ transferase Chain: B: phosphoethanolamine n-methyltransferase 2; semet haemonchus contortus phosphoethanolamine n-methyltransferase 22 in complex with s-adenosyl-l-methionine
c4hi2B_ hydrolase Chain: B: acylphosphatase; crystal structure of an acylphosphatase protein cage
c4mozC_ lyase Chain: C: fructose-bisphosphate aldolase; fructose-bisphosphate aldolase from slackia heliotrinireducens dsm2 20476
c4bpxB_ transferase Chain: B: dna polymerase alpha catalytic subunit, dna primase large crystal structure of human primase in complex with the2 primase-binding motif of dna polymerase alpha
c4irqB_ transferase Chain: B: beta-1,4-galactosyltransferase 7; crystal structure of catalytic domain of human beta1,2 4galactosyltransferase 7 in closed conformation in complex with3 manganese and udp
c4c00A_ transport protein Chain: A: translocation and assembly module tama; crystal structure of tama from e. coli
c4bxrB_ cell cycle Chain: B: cpap; structure of the wild-type tcp10 domain of danio rerio cpap2 in complex with a peptide of danio rerio stil
c4k91A_ hydrolase Chain: A: d-ala-d-ala-carboxypeptidase; crystal structure of penicillin-binding protein 5 (pbp5) from2 pseudomonas aeruginosa in apo state
c4mg4G_ unknown function Chain: G: phosphonomutase; crystal structure of a putative phosphonomutase from burkholderia2 cenocepacia j2315
c4mncA_ transport protein Chain: A: trap dicarboxylate transporter-dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 polaromonas sp. js666 (bpro_4736), target efi-510156, with bound3 benzoyl formate, space group p21
c4m4wO_ replication Chain: O: primosomal protein dnai; mechanistic implications for the bacterial primosome assembly of the2 structure of a helicase-helicase loader complex
c4kjeA_ oxidoreductase Chain: A: glutaredoxin; atomic resolution structure of pfgrx1
c2mceA_ neuropeptide Chain: A: neuropeptide gamma; membrane induced structure of the mammalian tachykinin neuropeptide2 gamma
c2m74A_ structural protein Chain: A: fibrillin-1; 1h, 13c and 15n assignments of the four n-terminal domains of human2 fibrillin-1
c4mjzA_ lyase Chain: A: orotidine 5'-phosphate decarboxylase; 2.75 angstrom resolution crystal structure of putative orotidine-2 monophosphate-decarboxylase from toxoplasma gondii.
c4mnrA_ transferase Chain: A: peptidoglycan glycosyltransferase; crystal structure of d,d-transpeptidase domain of peptidoglycan2 glycosyltransferase from eggerthella lenta
c2mbyA_ rna binding protein Chain: A: ribosomal rna-processing protein 7; nmr structure of rrp7 c-terminal domain
c4bpxC_ transferase Chain: C: dna primase small subunit; crystal structure of human primase in complex with the2 primase-binding motif of dna polymerase alpha
c4mb1A_ hydrolase Chain: A: oligo-1,6-glucosidase 1; the structure of mall mutant enzyme g202p from bacillus subtilus
c4c0aA_ protein transport Chain: A: iq motif and sec7 domain-containing protein 1; arf1(delta1-17)in complex with brag2 sec7-ph domain
c4bzyC_ transferase Chain: C: 1,4-alpha-glucan-branching enzyme; crystal structure of human glycogen branching enzyme (gbe1)
c4mhvB_ transcription Chain: B: protein c-ets-2; crystal structure of the pnt domain of human ets2
c4mo1B_ transcription regulator Chain: B: antitermination protein q; crystal structure of antitermination protein q from bacteriophage2 lambda. northeast structural genomics consortium target or18a.
c4gdxB_ hydrolase Chain: B: gamma-glutamyltranspeptidase 1 light chain; crystal structure of human gamma-glutamyl transpeptidase--glutamate2 complex
c4mouA_ isomerase Chain: A: enoyl-coa hydratase/isomerase family protein; crystal structure of an enoyl-coa hydratase/isomerase family member,2 nysgrc target 028282
c4mowB_ oxidoreductase Chain: B: glucose 1-dehydrogenase; crystal structure of a putative glucose 1-dehydrogenase from2 burkholderia cenocepacia j2315
c4mhcA_ structural protein Chain: A: nucleoporin nup157; crystal structure of a nucleoporin
c4krgB_ transferase Chain: B: phosphoethanolamine n-methyltransferase 1; semet haemonchus contortus phosphoethanolamine n-methyltransferase 12 in complex with phosphoethanolamine and s-adenosylhomocysteine
c4h18D_ transferase Chain: D: cmt1; three dimensional structure of corynomycoloyl tranferase c
c3zf8A_ transferase Chain: A: mannan polymerase complexes subunit mnn9; crystal structure of saccharomyces cerevisiae mnn9 in2 complex with gdp and mn.
c4me9B_ transcription regulator Chain: B: transcriptional regulator, tetr family; crystal structure of a transcriptional regulator, tetr family2 (bce_2991) from bacillus cereus atcc 10987 at 2.50 a resolution
c4kw3A_ viral protein Chain: A: ns1; crystal structure of the non-structural protein 1 n-terminal origin-2 recognition/nickase domain from the emerging human bocavirus
c4h5yA_ protein transport Chain: A: lida protein, substrate of the dot/icm system; high-resolution crystal structure of legionella pneumophila lida (60-2 594)
c4c2lA_ hydrolase Chain: A: endo-xylogalacturonan hydrolase a; crystal structure of endo-xylogalacturonan hydrolase from2 aspergillus tubingensis
c3j4jA_ translation Chain: A: translation initiation factor if-2; model of full-length t. thermophilus translation initiation factor 22 refined against its cryo-em density from a 30s initiation complex map
c4mnuA_ transcription regulator Chain: A: slya-like transcription regulator; crystal structure of uncharacterized slya-like transcription regulator2 from listeria monocytogenes
c4mi0A_ transferase Chain: A: histone-lysine n-methyltransferase ezh2; human enhancer of zeste (drosophila) homolog 2(ezh2)
c2mdgA_ dna binding protein Chain: A: zinc finger protein 423; solution nmr structure of zinc finger protein 423 from homo sapiens,2 northeast structural genomics consortium (nesg) target hr7298f
c4l0eA_ oxidoreductase Chain: A: p450 monooxygenase; structure of p450sky (cyp163b3), a cytochrome p450 from skyllamycin2 biosynthesis (heme-coordinated expression tag)


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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