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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Sep 21

Fold library idPDB HeaderMoleculeTitle
c4m6iA_ hydrolase Chain: A: peptidoglycan amidase rv3717; structure of the reduced, zn-bound form of mycobacterium tuberculosis2 peptidoglycan amidase rv3717
c4m48A_ transport protein Chain: A: transporter; x-ray structure of dopamine transporter elucidates antidepressant2 mechanism
c4by2C_ structural protein Chain: C: anastral spindle 2, sas 4; sas-4 (dcpap) tcp domain in complex with a proline rich2 motif of ana2 (dstil) of drosophila melanogaster
c4kc5D_ transferase Chain: D: rhie protein; crystal structure of the c-terminal part of rhie from burkholderia2 rhizoxinica
c4krdB_ transferase/signaling protein Chain: B: pho85 cyclin-10; crystal structure of pho85-pcl10 complex
c4hu8A_ hydrolase Chain: A: gh10 xylanase; crystal structure of a bacterial ig-like domain containing gh102 xylanase from termite gut
c4mi2C_ isomerase Chain: C: putative enoyl-coa hydratase/isomerase; crystal structure of putative enoyl-coa hydratase/isomerase from2 mycobacterium abscessus
c4l3vB_ lyase Chain: B: cystathionine beta-synthase; crystal structure of delta516-525 human cystathionine beta-synthase
c4k1pG_ toxin Chain: G: nhea; structure of the nhea component of the nhe toxin from bacillus cereus
c4b96A_ sugar binding protein Chain: A: cellulose binding domain-containing protein; family 3b carbohydrate-binding module from the biomass2 sensoring system of clostridium clariflavum
c3zm7E_ isomerase Chain: E: dna gyrase subunit b; crystal structure of the atpase region of mycobacterium2 tuberculosis gyrb with amppcp
c4k7bA_ photosynthesis Chain: A: extrinsic protein in photosystem ii; crystal structure of extrinsic protein in photosystem ii
c4lr4A_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (eubrec_3654) from2 eubacterium rectale at 2.43 a resolution
c4jeoB_ fluorescent protein Chain: B: red fluorescent protein blfp-r5; crystal structure of red fluorescent protein lanrfpdam exposed to2 prolonged x-ray irradiation
c2mc3A_ hydrolase Chain: A: mus81 endonuclease homolog (yeast), isoform cra_b; nmr solution structure of the winged-helix domain from mus812 structure-specific endonuclease
c4luqD_ protein binding/toxin inhibitor Chain: D: uncharacterized protein; crystal structure of virulence effector tse3 in complex with2 neutralizer tsi3
c4lgdB_ signaling protein Chain: B: serine/threonine-protein kinase 3; structural basis for autoactivation of human mst2 kinase and its2 regulation by rassf5
c4m4xA_ transcription Chain: A: aryl hydrocarbon receptor; structure and dimerization properties of the aryl hydrocarbon receptor2 (ahr) pas-a domain
c4bl0B_ cell cycle Chain: B: checkpoint serine/threonine-protein kinase bub1; crystal structure of yeast bub3-bub1 bound to phospho-spc105
c4bzkA_ protein transport Chain: A: protein transport protein sec31; the structure of the copii coat assembled on membranes
c4mlcA_ signaling protein Chain: A: extracellular ligand-binding receptor; abc transporter substrate-binding protein fromdesulfitobacterium2 hafniense
c4jd0A_ transferase Chain: A: nucleotidyl transferase; structure of the inositol-1-phosphate ctp transferase from t.2 maritima.
c4maeB_ oxidoreductase Chain: B: methanol dehydrogenase; methanol dehydrogenase from methylacidiphilum fumariolicum solv
c4mijA_ transport protein Chain: A: trap dicarboxylate transporter, dctp subunit; crystal structure of a trap periplasmic solute binding protein from2 polaromonas sp. js666 (bpro_3107), target efi-510173, with bound3 alpha/beta d-galacturonate, space group p21
c4ml9A_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of uncharacterized tim barrel protein with the2 conserved phosphate binding site fromsebaldella termitidis
c4mlzB_ solute binding protein Chain: B: periplasmic binding protein; crystal structure of periplasmic binding protein from jonesia2 denitrificans
c4lgdF_ signaling protein Chain: F: ras association domain family member 5, rassf5; structural basis for autoactivation of human mst2 kinase and its2 regulation by rassf5
c3vxbA_ sugar binding protein Chain: A: putative sugar-binding lipoprotein; crystal structure of bxle from streptomyces thermoviolaceus opc-520
c4lb6B_ transferase/dna Chain: B: protein kinase containing z-dna binding domains; crystal structure of pkz zalpha in complex with ds(cg)6 (tetragonal2 form)
c4imhA_ metal transport, transport protein Chain: A: hemin degrading factor; crystal structure of cytoplasmic heme binding protein, phus, from2 pseudomonas aeruginosa
c4lxgA_ hydrolase Chain: A: mcp hydrolase; crystal structure of dxnb2, a carbon - carbon bond hydrolase from2 sphingomonas wittichii rw1
c4lgdH_ signaling protein Chain: H: ras association domain family member 5, rassf5; structural basis for autoactivation of human mst2 kinase and its2 regulation by rassf5
c4bwcB_ hydrolase Chain: B: phospholipase b-like 1; x-ray structure of a phospholiapse b like protein 1 from2 bovine kidneys
c4hwtA_ ligase/ligase inhibitor Chain: A: threonine--trna ligase, cytoplasmic; crystal structure of human threonyl-trna synthetase bound to a novel2 inhibitor
c4btfA_ transferase Chain: A: mixed lineage kinase domain-like protein; structure of mlkl
c4ka8A_ hydrolase Chain: A: oligopeptidase a; structure of organellar oligopeptidase
c4bpsA_ hydrolase Chain: A: fkbo; crystal structure of chorismatase at 1.08 angstrom resolution.
c4luqB_ protein binding/toxin inhibitor Chain: B: uncharacterized protein; crystal structure of virulence effector tse3 in complex with2 neutralizer tsi3
c4mk6A_ transcription regulator Chain: A: probable dihydroxyacetone kinase regulator dhsk_reg; crystal structure of probable dihydroxyacetone kinase regulator2 dhsk_reg from listeria monocytogenes egd-e
c4bwcA_ hydrolase Chain: A: phospholipase b-like 1; x-ray structure of a phospholiapse b like protein 1 from2 bovine kidneys
c3w6vA_ transcription activator/dna Chain: A: adpa; crystal structure of the dna-binding domain of adpa, the global2 transcriptional factor, in complex with a target dna


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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