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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Aug 31

Fold library idPDB HeaderMoleculeTitle
c2lxpB_ ligase Chain: B: e3 ubiquitin-protein ligase amfr; nmr structure of two domains in ubiquitin ligase gp78, ring and g2br,2 bound to its conjugating enzyme ube2g
c4lbhA_ lyase Chain: A: 5-chloro-2-hydroxyhydroquinone dehydrochlorinase (tftg); 5-chloro-2-hydroxyhydroquinone dehydrochlorinase (tftg) from2 burkholderia phenoliruptrix ac1100: apo-form
c4b7hB_ oxidoreductase Chain: B: catalase; structure of a highdose liganded bacterial catalase
c4lrvL_ dna binding protein Chain: L: dna sulfur modification protein dnde; crystal structure of dnde from escherichia coli b7a involved in dna2 phosphorothioation modification
c3zleI_ membrane protein Chain: I: apical membrane antigen 1; crystal structure of toxoplasma gondii sporozoite ama1
c4kzvB_ carbohydrate-binding protein Chain: B: c-type lectin mincle; structure of the carbohydrate-recognition domain of the c-type lectin2 mincle bound to trehalose
c4gkgA_ signaling protein Chain: A: c4-dicarboxylate transport sensor protein dctb; crystal structure of the s-helix linker
c4l3fG_ cell invasion Chain: G: internalin k; crystal structure of internalin k (inlk) from listeria monocytogenes
c4ijpB_ transferase/transferase inhibitor Chain: B: serine/threonine-protein kinase prp4 homolog; crystal structure of human prpf4b kinase domain in complex with 4-{5-2 [(2-chloro-pyridin-4-ylmethyl)-carbamoyl]-thiophen-2-yl}-3 benzo[b]thiophene-2-carboxylic acid amine
c2m8gX_ transcription Chain: X: transcriptional regulator; structure, function, and tethering of dna-binding domains in 542 transcriptional activators
c4lomA_ lyase Chain: A: imidazoleglycerol-phosphate dehydratase; crystal structure of mycobacterium tuberculosis hisb in complex with2 its substrate
c4m7wA_ transferase Chain: A: purine nucleoside phosphorylase deod-type; crystal structure of purine nucleoside phosphorylase from leptotrichia2 buccalis c-1013-b, nysgrc target 029767.
c4k6mA_ transferase Chain: A: polyprotein; crystal structure of the full-length japanese encephalitis virus ns5
c4bujF_ hydrolase Chain: F: superkiller protein 3; crystal structure of the s. cerevisiae ski2-3-8 complex
c4l5eA_ protein binding Chain: A: transcriptional regulator (ntrc family); crystal structure of a. aeolicus ntrc1 dna binding domain
c4aurA_ hydrolase Chain: A: leoa; leoa bacterial dynamin gtpase from etec
c3j47O_ protein binding Chain: O: 26s proteasome regulatory subunit rpn9; formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
c4m3nA_ transferase Chain: A: purine nucleoside phosphorylase deod-type; crystal structure of purine nucleoside phosphorylase from meiothermus2 ruber dsm 1279, nysgrc target 029804.
c2ymzF_ sugar binding protein Chain: F: galectin 2; crystal structure of chicken galectin 2
c4m8kA_ hydrolase Chain: A: hypothetical protein, gdsl-like lipase/acylhydrolase family crystal structure of a hypothetical protein (bacuni_00748) from2 bacteroides uniformis atcc 8492 at 1.90 a resolution
c2lxhC_ ligase Chain: C: e3 ubiquitin-protein ligase amfr; nmr structure of the ring domain in ubiquitin ligase gp78
c3j47P_ protein binding Chain: P: 26s proteasome regulatory subunit rpn5; formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
c4gkgF_ signaling protein Chain: F: c4-dicarboxylate transport sensor protein dctb; crystal structure of the s-helix linker
c4m7oA_ iron binding protein Chain: A: iron-binding protein; the crystal structure of a possible an iron-binding (periplasmic2 solute-binding) protein from staphylococcus epidermidis atcc 12228.
c4gt8A_ transferase Chain: A: sensor protein vras; crystal structure of the catalytic and atp-binding domain from vras in2 complex with adp
c4gtnA_ transferase Chain: A: anthranilate phosphoribosyltransferase; structure of anthranilate phosphoribosyl transferase from2 acinetobacter baylyi
c4bujA_ hydrolase Chain: A: antiviral helicase ski2; crystal structure of the s. cerevisiae ski2-3-8 complex
c4ljiA_ electron transport Chain: A: cytochrome c-550-like protein; crystal structure at 1.5 angstrom resolution of the psbv2 cytochrome2 from the cyanobacterium thermosynechococcus elongatus
c4gqmA_ unknown function Chain: A: ct009; crystal structure of a helix-turn-helix containing hypothetical2 protein (ct009) from chlamydia trachomatis in a sub-domain swap3 conformation
c4m55E_ lyase Chain: E: udp-glucuronic acid decarboxylase 1; crystal structure of human udp-xylose synthase r236h substitution
c4bxoA_ hydrolase/dna Chain: A: fanconi anemia group m protein; architecture and dna recognition elements of the fanconi2 anemia fancm-faap24 complex
c3zhcB_ hydrolase Chain: B: phytase; structure of the phytase from citrobacter braakii at 2.32 angstrom resolution.
c4i3hA_ isomerase/dna Chain: A: topoisomerase iv subunit b, dna topoisomerase 4 subunit a a three-gate structure of topoisomerase iv from streptococcus2 pneumoniae
c4bxoB_ hydrolase/dna Chain: B: fanconi anemia-associated protein of 24 kda; architecture and dna recognition elements of the fanconi2 anemia fancm-faap24 complex
c3j47Q_ protein binding Chain: Q: 26s proteasome regulatory subunit rpn6; formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
c4lq8B_ cell adhesion Chain: B: sca-family protein; rickettsia rickettsii cell surface antigen 4 (sca4) head domain2 (residues 21-360)
c4lloE_ transport protein Chain: E: potassium voltage-gated channel subfamily h member 1; structure of the eag domain-cnbhd complex of the mouse eag1 channel
c4i14B_ hydrolase, lyase Chain: B: riboflavin biosynthesis protein ribba; crystal structure of mtb-riba2 (rv1415)
c3j47R_ protein binding Chain: R: 26s proteasome regulatory subunit rpn7; formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
c2m3cA_ structural protein Chain: A: crystallin, gamma m7; solution structure of gammam7-crystallin
c4k59A_ rna binding protein Chain: A: rna binding protein rsmf; crystal structure of pseudomonas aeruginosa rsmf
c4kc3B_ immune system Chain: B: interleukin-1 receptor-like 1; cytokine/receptor binary complex
c3j47S_ protein binding Chain: S: 26s proteasome regulatory subunit rpn3; formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
c4mamB_ lyase Chain: B: phosphoribosylaminoimidazole carboxylase, atpase subunit; the crystal structure of phosphoribosylaminoimidazole carboxylase2 atpase subunit of francisella tularensis subsp. tularensis schu s4 in3 complex with an adp analog, amp-cp
c3zldB_ membrane protein Chain: B: rhoptry neck protein 2; crystal structure of toxoplasma gondii sporozoite ama1 in2 complex with a 36 aa region of sporozoite ron2
c3j47U_ protein binding Chain: U: 26s proteasome regulatory subunit rpn8; formation of an intricate helical bundle dictates the assembly of the2 26s proteasome lid
c4bwzA_ transport protein Chain: A: na(+)/h(+) antiporter; crystal structure of the sodium proton antiporter, napa
c4ladB_ ligase/ligase Chain: B: e3 ubiquitin-protein ligase amfr; crystal structure of the ube2g2:ring-g2br complex
c4m55F_ lyase Chain: F: udp-glucuronic acid decarboxylase 1; crystal structure of human udp-xylose synthase r236h substitution
c4bydU_ ribosome Chain: U: 30s ribosomal protein thx; structure of thermus thermophilus 30s ribosome
c4bybU_ ribosome Chain: U: 30s ribosomal protein thx; structure of thermus thermophilus 30s ribosome
c4l3aB_ cell invasion Chain: B: internalin k; crystal structure of internalin k (inlk) from listeria monocytogenes
c4l3aA_ cell invasion Chain: A: internalin k; crystal structure of internalin k (inlk) from listeria monocytogenes
c2m7gA_ cell adhesion, structural protein, elect Chain: A: geopilin domain 1 protein; structure of the type iva major pilin from the electrically conductive2 bacterial nanowires of geobacter sulfurreducens


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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