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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Aug 24

Fold library idPDB HeaderMoleculeTitle
c4bofA_ hydrolase Chain: A: arginine deiminase; crystal structure of arginine deiminase from group a streptococcus
c4bloC_ hydrolase Chain: C: packaging enzyme p4; p4 protein from bacteriophage phi6 in complex with adp
c4lg3B_ structural genomics, unknown function Chain: B: uncharacterized protein; crystal structure of a hypothetical protein (despig_00776) from2 desulfovibrio piger atcc 29098 at 2.49 a resolution
c4blqB_ hydrolase Chain: B: p4; p4 protein from bacteriophage phi8
c4kvvL_ de novo protein Chain: L: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4bluB_ transferase Chain: B: ribosomal rna large subunit methyltransferase j; crystal structure of escherichia coli 23s rrna (a2030-n6)-2 methyltransferase rlmj
c4jueB_ protein binding Chain: B: ubiquitin conjugating enzyme ubc9; crystal structure of plasmodium falciparum ubiquitin conjugating2 enzyme ubc9
c4m1qB_ oxidoreductase Chain: B: l-lactate dehydrogenase; crystal structure of l-lactate dehydrogenase from bacillus2 selenitireducens mls10, nysgrc target 029814.
c4bptC_ oxidoreductase Chain: C: phenylalanine-4-hydroxylase (pah) (phe-4-monooxygenase); structural and thermodynamic insight into phenylalanine2 hydroxylase from the human pathogen legionella pneumophila
c4m1eC_ transferase Chain: C: purine nucleoside phosphorylase; crystal structure of purine nucleoside phosphorylase i from2 planctomyces limnophilus dsm 3776, nysgrc target 029364.
c4kvvD_ de novo protein Chain: D: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4g0dD_ hydrolase Chain: D: collagenase 3; human collagenase 3 (mmp-13) full form with peptides from pro-domain
c4bwxB_ gene regulation Chain: B: pab-dependent poly(a)-specific ribonuclease subunit pan-3; structure of neurospora crassa pan3 pseudokinase mutant
c4gn2A_ hydrolase Chain: A: oxacillinase; crystal structure of oxa-45, a class d beta-lactamase with extended2 spectrum activity
c4hzbA_ hydrolase Chain: A: putative cytoplasmic protein; crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
c4kvvG_ de novo protein Chain: G: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4lvuB_ oxidoreductase Chain: B: oxidoreductase, short chain dehydrogenase/reductase family; crystal structure of a putative short chain dehydrogenase from2 burkholderia thailandensis
c4blpD_ hydrolase Chain: D: packaging enzyme p4; p4 protein from bacteriophage phi13
c4g0dX_ hydrolase Chain: X: collagenase 3, pro-domain peptide; human collagenase 3 (mmp-13) full form with peptides from pro-domain
c4loqL_ transferase Chain: L: tgf-beta-activated kinase 1 and map3k7-binding protein 1; structural basis of autoactivation of p38 alpha induced by tab12 (tetragonal crystal form with bound sulphate)
c4lehA_ lyase Chain: A: bile acid 7-alpha dehydratase, baie; crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
c2yoiA_ oxidoreductase Chain: A: leca thioredoxin; crystal structure of ancestral thioredoxin relative to last2 eukaryotes common ancestor (leca) from the precambrian period
c4fu4C_ hydrolase Chain: C: collagenase 3, pro-domain peptide; human collagenase 3 (mmp-13) with peptide from pro-domain
c4binA_ hydrolase Chain: A: n-acetylmuramoyl-l-alanine amidase amic; crystal structure of the e. coli n-acetylmuramoyl-l-alanine amidase2 amic
c4kvvF_ de novo protein Chain: F: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4lz2A_ signaling protein Chain: A: bromodomain adjacent to zinc finger domain protein 2a; crystal structure of the bromodomain of human baz2a
c3zokB_ lyase Chain: B: 3-dehydroquinate synthase; structure of 3-dehydroquinate synthase from actinidia2 chinensis in complex with nad
c4g0dY_ hydrolase Chain: Y: collagenase 3, pro-domain peptide; human collagenase 3 (mmp-13) full form with peptides from pro-domain
c2ma2A_ calcium-binding protein Chain: A: ras guanyl-releasing protein 2; solution structure of rasgrp2 ef hands bound to calcium
c4hzbE_ hydrolase Chain: E: putative periplasmic protein; crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
c3vwbA_ transcription/dna Chain: A: virulence regulon transcriptional activator virb; the structure of a bacterial transcriptional activator complexed by2 dsdna
c3wg6C_ oxidoreductase Chain: C: conjugated polyketone reductase c1; crystal structure of conjugated polyketone reductase c1 from candida2 parapsilosis complexed with nadph
c4kvjA_ oxidoreductase Chain: A: fatty acid alpha-oxidase; crystal structure of oryza sativa fatty acid alpha-dioxygenase with2 hydrogen peroxide
c4lc3B_ transferase Chain: B: putative udp-4-amino-4-deoxy-l-arabinose--oxoglutarate x-ray crystal structure of a putative udp-4-amino-4-deoxy-l-arabinose-2 -oxoglutarate aminotransferase from burkholderia cenocepacia
c4fq3B_ protein binding Chain: B: fusion (involved in t(12;16) in malignant liposarcoma); crystal structure of transportin/fus-nls
c4l9uA_ signaling protein Chain: A: ras guanyl-releasing protein 1; structure of c-terminal coiled coil of rasgrp1
c4hgnB_ hydrolase Chain: B: 2-keto-3-deoxy-d-manno-octulosonate 8-phosphate crystal structure of 2-keto-3-deoxyoctulosonate 8-phosphate2 phosphohydrolase from bacteroides thetaiotaomicron
c4krxB_ hydrolase Chain: B: acetyl esterase; structure of aes from e. coli
c4m0mA_ unknown function Chain: A: putative uncharacterized protein; the crystal structure of a functionally unknown protein lpg2422 from2 legionella pneumophila subsp. pneumophila str. philadelphia 1
c4kvvI_ de novo protein Chain: I: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4h1vA_ hydrolase Chain: A: dynamin-1-like protein; gmp-pnp bound dynamin-1-like protein gtpase-ged fusion
c4bwpA_ gene regulation Chain: A: pab-dependent poly(a)-specific ribonuclease subunit pan-3; structure of drosophila melanogaster pan3 pseudokinase
c4loqK_ transferase Chain: K: tgf-beta-activated kinase 1 and map3k7-binding protein 1; structural basis of autoactivation of p38 alpha induced by tab12 (tetragonal crystal form with bound sulphate)
c4kvuC_ de novo protein Chain: C: 6-helix coiled coil cc-hex-l17c-w224bf; crystal structure of a 6-helix coiled coil cc-hex-l17c-w224bf
c4kvtD_ de novo protein Chain: D: 6-helix coiled coil cc-hex-l24c peptide; crystal structure of a 6-helix coiled coil cc-hex-l24c
c4looB_ transferase Chain: B: tgf-beta-activated kinase 1 and map3k7-binding protein 1; structural basis of autoactivation of p38 alpha induced by tab12 (monoclinic crystal form)
c2lwlA_ antimicrobial protein Chain: A: beta-defensin 106; structural basis for the interaction of human β-defensin 6 and2 its putative chemokine receptor ccr2 and breast cancer microvesicles
c4g0dZ_ hydrolase Chain: Z: collagenase 3, pro-domain peptide; human collagenase 3 (mmp-13) full form with peptides from pro-domain
c4kvvH_ de novo protein Chain: H: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4kvtC_ de novo protein Chain: C: 6-helix coiled coil cc-hex-l24c peptide; crystal structure of a 6-helix coiled coil cc-hex-l24c
c4lopK_ transferase Chain: K: tgf-beta-activated kinase 1 and map3k7-binding protein 1; structural basis of autoactivation of p38 alpha induced by tab12 (tetragonal crystal form)
c4fu4D_ hydrolase Chain: D: collagenase 3, pro-domain peptide; human collagenase 3 (mmp-13) with peptide from pro-domain
c4fvlD_ hydrolase Chain: D: collagenase 3, pro-domain peptide; human collagenase 3 (mmp-13) full form with peptides from pro-domain
c4kvvC_ de novo protein Chain: C: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4b4dA_ oxidoreductase Chain: A: ferredoxin-nadp reductase; crystal structure of fad-containing ferredoxin-nadp reductase from2 xanthomonas axonopodis pv. citri
c4kvtB_ de novo protein Chain: B: 6-helix coiled coil cc-hex-l24c peptide; crystal structure of a 6-helix coiled coil cc-hex-l24c
c4c0rB_ transport protein Chain: B: putative amino acid binding protein; molecular and structural basis of glutathione import in2 gram-positive bacteria via gsht and the cystine abc3 importer tcybc of streptococcus mutans.
c4l9uB_ signaling protein Chain: B: ras guanyl-releasing protein 1; structure of c-terminal coiled coil of rasgrp1
c4kvuA_ de novo protein Chain: A: 6-helix coiled coil cc-hex-l17c-w224bf; crystal structure of a 6-helix coiled coil cc-hex-l17c-w224bf
c4kvtA_ de novo protein Chain: A: 6-helix coiled coil cc-hex-l24c peptide; crystal structure of a 6-helix coiled coil cc-hex-l24c
c4gn5A_ de novo protein/hydrolase Chain: A: obody am3l15; obody am3l15 bound to hen egg-white lysozyme
c4b6lA_ transferase Chain: A: serine/threonine-protein kinase plk3; discovery of oral polo-like kinase (plk) inhibitors with enhanced2 selectivity profile using residue targeted drug design
c4b5nA_ oxidoreductase Chain: A: oxidoreductase, fmn-binding; crystal structure of oxidized shewanella yellow enzyme 4 (sye4)
c4kvuB_ de novo protein Chain: B: 6-helix coiled coil cc-hex-l17c-w224bf; crystal structure of a 6-helix coiled coil cc-hex-l17c-w224bf
c4kvtE_ de novo protein Chain: E: 6-helix coiled coil cc-hex-l24c peptide; crystal structure of a 6-helix coiled coil cc-hex-l24c
c4lzhA_ transferase Chain: A: l,d-transpeptidase; l,d-transpeptidase from klebsiella pneumoniae
c4kvvA_ de novo protein Chain: A: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4kvvK_ de novo protein Chain: K: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4kvvB_ de novo protein Chain: B: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4kvtF_ de novo protein Chain: F: 6-helix coiled coil cc-hex-l24c peptide; crystal structure of a 6-helix coiled coil cc-hex-l24c
c4lopN_ transferase Chain: N: tgf-beta-activated kinase 1 and map3k7-binding protein 1; structural basis of autoactivation of p38 alpha induced by tab12 (tetragonal crystal form)
c4l9mA_ signaling protein Chain: A: ras guanyl-releasing protein 1; autoinhibited state of the ras-specific exchange factor rasgrp1
c4kvvJ_ de novo protein Chain: J: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4kvvE_ de novo protein Chain: E: 6-helix coiled coil cc-hex-l24c peptide with an alkylated crystal structure of an alkylated cys mutant of cc-hex
c4lopL_ transferase Chain: L: tgf-beta-activated kinase 1 and map3k7-binding protein 1; structural basis of autoactivation of p38 alpha induced by tab12 (tetragonal crystal form)
c4hedA_ signaling protein Chain: A: uncharacterized protein; zebrafish chemokine cxl1
c4g0dW_ hydrolase Chain: W: collagenase 3, pro-domain peptide; human collagenase 3 (mmp-13) full form with peptides from pro-domain


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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