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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Jul 27

Fold library idPDB HeaderMoleculeTitle
c4gcvD_ transcription Chain: D: putative transcription protein; structure of a putative transcription factor (pa1374)from pseudomonas2 aeruginosa
c4lkbA_ isomerase Chain: A: hypothetical protein alr4568/putative 4-oxalocrotonate crystal structure of a putative 4-oxalocrotonate tautomerase from2 nostoc sp. pcc 7120
c4knuB_ oxidoreductase Chain: B: multicopper oxidase type 1; copper nitrite reductase from nitrosomonas europaea at ph 6.5
c4kwcA_ transferase Chain: A: bpuml; structure of the plantazolicin methyltransferase bpuml in complex with2 sah
c4l45A_ transferase Chain: A: rps6kb1 protein; crystal structures of human p70s6k1-t389e
c4iegD_ transferase Chain: D: rna-dependent rna polymerase p2; structure and interactions of the rna-dependent rna polymerase from2 bacteriophage phi12 (p1 crystal form)
c4bx9B_ protein transport Chain: B: vacuolar protein sorting-associated protein 33a; human vps33a in complex with a fragment of human vps16
c4l6rA_ membrane protein Chain: A: soluble cytochrome b562 and glucagon receptor chimera; structure of the class b human glucagon g protein coupled receptor
c4bk2A_ oxidoreductase Chain: A: probable salicylate monooxygenase; crystal structure of 3-hydroxybenzoate 6-hydroxylase2 uncovers lipid-assisted flavoprotein strategy for3 regioselective aromatic hydroxylation: q301e mutant
c4frxB_ transport protein Chain: B: anaerobically-induced outer membrane porin opre; crystal structure of pseudomonas aeruginosa occk8 (opre)
c4ldaF_ transcription Chain: F: tadz; crystal structure of a hypothetical protein (tadz) from pseudomonas2 aeruginosa pao1 at 2.70 a resolution (psi community target, shapiro)
c2ynuB_ hydrolase Chain: B: gim-1 protein; apo gim-1 with 2mol. crystal structures of pseudomonas aeruginosa2 gim-1: active site plasticity in metallo-beta-lactamases
c4i2yB_ fluorescent protein Chain: B: rgeco1; crystal structure of the genetically encoded calcium indicator rgeco1
c4lk5B_ lyase Chain: B: enoyl-coa hydratase; crystal structure of a enoyl-coa hydratase from mycobacterium avium2 subsp. paratuberculosis k-10
c4lgqA_ lyase Chain: A: putative polyketide cyclase; crystal structure of a putative polyketide cyclase (cv_0247) from2 chromobacterium violaceum atcc 12472 at 2.72 a resolution
c3w9sB_ signaling protein/antimicrobial protein Chain: B: ompr family response regulator in two-component regulatory crystal structure analysis of the n-terminal receiver domain of2 response regulator pmra
c4fq5B_ isomerase Chain: B: maleate cis-trans isomerase; crytal structure of the maleate isomerase iso(c200a) from pseudomonas2 putida s16 with maleate
c4ii0A_ hydrolase inhibitor Chain: A: cratabl; crystal structure of cratabl, a trypsin inhibitor from crataeva tapia
c4fsoB_ transport protein Chain: B: probable porin; crystal structure of pseudomonas aeruginosa occk10 (opdn)
c4fspA_ transport protein Chain: A: probable porin; crystal structure of pseudomonas aeruginosa occk11 (opdr)
c4ln1B_ oxidoreductase Chain: B: l-lactate dehydrogenase 1; crystal structure of l-lactate dehydrogenase from bacillus cereus atcc2 14579 complexed with calcium, nysgrc target 029452
c4ldfA_ transferase Chain: A: gcn5 like acetylase + bromodomain; crystal structure of cpbrd2 from cryptosporidium, cgd3_3190
c4kxfF_ immune system Chain: F: nlr family card domain-containing protein 4; crystal structure of nlrc4 reveals its autoinhibition mechanism
c4g4xA_ peptide binding protein Chain: A: peptidoglycan-associated lipoprotein; crystal structure of peptidoglycan-associated lipoprotein from2 acinetobacter baumannii
c4fioA_ hydrolase Chain: A: methenyltetrahydromethanopterin cyclohydrolase; crystal structure of methenyltetrahydromethanopterin cyclohydrolase2 from methanobrevibacter ruminantium
c4lnhA_ transferase Chain: A: uridine phosphorylase; crystal structure of uridine phosphorylase from vibrio fischeri es114,2 nysgrc target 29520.
c4g78A_ transferase Chain: A: histidine phosphotransfer protein; subatomic resolution crystal structure of histidine-containing2 phosphotransfer protein mthpt2 from medicago truncatula
c4l4iA_ metal transport Chain: A: ryanodine receptor 2; crystal structure of mouse ryanodine receptor isoform 2 (ryr2) 1-5472 disease mutant r420q
c4b2nB_ electron transport Chain: B: 70 kda protein; latex oxygenase roxa
c4bruB_ hydrolase Chain: B: enhancer of mrna-decapping protein 3; crystal structure of the yeast dhh1-edc3 complex
c4lkrA_ transferase Chain: A: purine nucleoside phosphorylase deod-type; crystal structure of deod-3 gene product from shewanella oneidensis2 mr-1, nysgrc target 029437
c4ft6A_ transport protein Chain: A: probable porin; crystal structure of pseudomonas aeruginosa occk9 (opdg)
c4lgvA_ oxidoreductase Chain: A: glucose-6-phosphate 1-dehydrogenase; x-ray crystal structure of glucose-6-phosphate 1-dehydrogenase from2 mycobacterium avium
c4j7bF_ transferase Chain: F: 205 kda microtubule-associated protein; crystal structure of polo-like kinase 1
c4b2oB_ hydrolase Chain: B: ymdb phosphodiesterase; crystal structure of bacillus subtilis ymdb, a global2 regulator of late adaptive responses.
c4bx9C_ protein transport Chain: C: vacuolar protein sorting-associated protein 16 homolog; human vps33a in complex with a fragment of human vps16
c4lj2A_ lyase Chain: A: chorismate synthase; crystal structure of chorismate synthase from acinetobacter baumannii2 at 3.15a resolution
c4lltB_ transferase Chain: B: geranyltranstransferase; crystal structure of a farnesyl diphosphate synthase from roseobacter2 denitrificans och 114, target efi-509393, with two ipp and calcium3 bound in active site
c4frtA_ transport protein Chain: A: probable porin; crystal structure of pseudomonas aeruginosa occk7 (opdd)
c4kzzC_ ribosome Chain: C: 40s ribosomal protein s2; rabbit 40s ribosomal subunit in complex with mrna, initiator trna and2 eif1a
c3wcyA_ cytokine receptor/cytokine Chain: A: interferon alpha/beta receptor 1; murine ifnar1 in complex with interferon-beta
c4kzpC_ oxidoreductase Chain: C: oxidoreductase, short chain dehydrogenase/reductase family crystal structure of a putative short chain dehydrogenase from2 mycobacterium smegmatis
c4kd6A_ isomerase Chain: A: enoyl-coa hydratase/isomerase; crystal structure of a enoyl-coa hydratase/isomerase from burkholderia2 graminis c4d1m
c4jphB_ cytokine Chain: B: gremlin-2; crystal structure of protein related to dan and cerberus (prdc)
c2m9aA_ metal binding protein Chain: A: e3 ubiquitin-protein ligase zfp91; solution nmr structure of e3 ubiquitin-protein ligase zfp91 from homo2 sapiens, northeast structural genomics consortium (nesg) target3 hr7784a
c4lnaA_ transferase Chain: A: purine nucleoside phosphorylase; crystal structure of purine nucleoside phosphorylase i from spirosoma2 linguale dsm 74, nysgrc target 029362
c4jrbA_ lipid binding protein Chain: A: green fluorescent protein, major allergen bla g 1.0101; structure of cockroach allergen bla g 1 tandem repeat as a egfp fusion
c4kyrA_ hydrolase, sugar binding protein Chain: A: phosphoglucan phosphatase lsf2, chloroplastic; structure of a product bound plant phosphatase
c4g9uD_ transferase Chain: D: thymidylate synthase; crystal structure of trichinella spiralis thymidylate synthase2 complexed with dump
c4j0mA_ transferase Chain: A: serine/threonine-protein kinase bri1-like 1; crystal structure of brl1 (lrr) in complex with brassinolide
c4ljsA_ transport protein Chain: A: periplasmic binding protein; the crystal structure of a periplasmic binding protein from2 veillonella parvula dsm 2008
c4brwB_ hydrolase Chain: B: dna topoisomerase 2-associated protein pat1; crystal structure of the yeast dhh1-pat1 complex
c4ldgA_ unknown function Chain: A: protein with a set domain within carboxy region; crystal structure of cpset8 from cryptosporidium, cgd4_370
c4j7bC_ transferase Chain: C: 205 kda microtubule-associated protein; crystal structure of polo-like kinase 1
c4kvzA_ transferase Chain: A: baml; crystal structure of the plantazolicin methyltransferase baml in2 complex with sah
c4kxfP_ immune system Chain: P: nlr family card domain-containing protein 4; crystal structure of nlrc4 reveals its autoinhibition mechanism
c4lobA_ transferase Chain: A: polyprenyl synthetase; crystal structure of polyprenyl diphosphate synthase a1s_2732 (target2 efi-509223) from acinetobacter baumannii


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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