Standard Mode | Switch to Expert Mode | Login to view past jobs Retrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Jul 20

Fold library idPDB HeaderMoleculeTitle
c4k8nF_ lipid transport Chain: F: glycolipid transfer protein domain-containing protein 1; crystal structure of human ceramide-1-phosphate transfer protein2 (cptp) in complex with 18:1 ceramide-1-phosphate (18:1-c1p)
c4bolA_ hydrolase Chain: A: ampdh2; crystal structure of ampdh2 from pseudomonas aeruginosa in2 complex with pentapeptide
c4kayA_ transferase Chain: A: yhbx/yhjw/yijp/yjdb family protein; structure of the soluble domain of lipooligosaccharide2 phosphoethanolamine transferase a from neisseria meningitidis -3 complex with zn
c4jr6A_ oxidoreductase Chain: A: possible conserved membrane or secreted protein; crystal structure of dsba from mycobacterium tuberculosis (reduced)
c3w20B_ oxidoreductase Chain: B: putative uncharacterized protein; crystal structure of a novel n-substituted l-amino acid dioxygenase2 from burkholderia ambifaria ammd
c3zhbC_ oxidoreductase Chain: C: r-imine reductase; r-imine reductase from streptomyces kanamyceticus in2 complex with nadp.
c4bubA_ ligase Chain: A: udp-n-acetylmuramoyl-l-alanyl-d-glutamate--ld-lysine crystal structure of mure ligase from thermotoga maritima2 in complex with adp
c4jayC_ oxidoreductase Chain: C: udp-n-acetylenolpyruvoylglucosamine reductase; crystal structure of p. aeruginosa murb in complex with nadp+
c4kk1Q_ immune system Chain: Q: tuberous sclerosis 1 protein homolog; crystal structure of tsc1 core domain from s. pombe
c4gxzB_ isomerase Chain: B: suppression of copper sensitivity protein; crystal structure of a periplasmic thioredoxin-like protein from2 salmonella enterica serovar typhimurium
c4ld6A_ unknown function Chain: A: pwwp domain-containing protein 2b; pwwp domain of human pwwp domain-containing protein 2b
c4ff5A_ hydrolase Chain: A: glycosyl hydrolase 25; structure basis of a novel virulence factor ghip a glycosyl hydrolase2 25 of streptococcus pneumoniae participating in host cell invasion
c3zoaB_ hydrolase Chain: B: trehalose synthase/amylase tres; the structure of trehalose synthase (tres) of mycobacterium2 smegmatis in complex with acarbose
c4keoB_ folate binding protein Chain: B: folate receptor alpha; structure of human folate receptor alpha in complex with folic acid
c4l6yB_ structural protein Chain: B: protein regulator of cytokinesis 1; structure of the microtubule associated protein prc1 (protein2 regulator of cytokinesis 1)
c3w6sA_ transferase Chain: A: mpr1 protein; yeast n-acetyltransferase mpr1 involved in oxidative stress tolerance2 via proline metabolism
c4bpo9_ ribosome Chain: 9: 40s ribosomal protein rps31e; the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 3
c4bucA_ ligase Chain: A: udp-n-acetylmuramoylalanine--d-glutamate ligase; crystal structure of murd ligase from thermotoga maritima in apo form
c4k5yA_ membrane protein, receptor Chain: A: corticotropin-releasing factor receptor 1, t4-lysozyme crystal structure of human corticotropin-releasing factor receptor 12 (crf1r) in complex with the antagonist cp-376395
c4k6lC_ toxin Chain: C: putative pertussis-like toxin subunit; structure of typhoid toxin
c4bd9B_ hydrolase/hydrolase inhibitor Chain: B: carboxypeptidase inhibitor smci; structure of the complex between smci and human carboxypeptidase a4
c3v8oB_ structural protein Chain: B: filamin-c; human filamin c ig - like domains 4 and 5
c4g1pA_ hydrolase Chain: A: cys-gly metallodipeptidase dug1; structural and mechanistic basis of substrate recognition by novel di-2 peptidase dug1p from saccharomyces cerevisiae
c4k08A_ signaling protein Chain: A: methyl-accepting chemotaxis sensory transducer; periplasmic sensor domain of chemotaxis protein, adeh_3718
c4bpp0_ ribosome Chain: 0: translation initiation factor eif-1a family protein; the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 4
c3zplE_ transcription/dna Chain: E: putative marr-family transcriptional repressor; crystal structure of sco3205, a marr family transcriptional2 regulator from streptomyces coelicolor, in complex with dna
c4lctD_ signaling protein Chain: D: cop9 signalosome complex subunit 1; crystal structure and versatile functional roles of the cop92 signalosome subunit 1
c4hyjB_ proton transport Chain: B: rhodopsin; crystal structure of exiguobacterium sibiricum rhodopsin
c4iopB_ immune system Chain: B: killer cell lectin-like receptor subfamily f member 2; crystal structure of nkp65 bound to its ligand kacl
c4ivnB_ transcription regulator Chain: B: transcriptional regulator; the vibrio vulnificus nanr protein complexed with mannac-6p
c4kj12_ ribosome Chain: 2: 50s ribosomal protein l34; control of ribosomal subunit rotation by elongation factor g
c4lb0B_ isomerase Chain: B: uncharacterized protein; crystal structure of a hydroxyproline epimerase from agrobacterium2 vitis, target efi-506420, with bound trans-4-oh-l-proline
c4kiz2_ ribosome Chain: 2: 50s ribosomal protein l34; control of ribosomal subunit rotation by elongation factor g
c4jzaB_ hydrolase Chain: B: uncharacterized protein; crystal structure of a legionella phosphoinositide phosphatase:2 insights into lipid metabolism in pathogen host interaction
c4lg1A_ transferase Chain: A: protein-lysine methyltransferase mettl21d; human methyltransferase-like protein 21d
c4bopA_ hydrolase Chain: A: otu domain-containing protein 1; structure of otud1 otu domain
c3zljC_ dna binding protein/dna Chain: C: dna mismatch repair protein muts; crystal structure of full-length e.coli dna mismatch repair2 protein muts d835r mutant in complex with gt mismatched dna
c4bozA_ hydrolase Chain: A: ubiquitin thioesterase otu1; structure of otud2 otu domain in complex with k11-linked di ubiquitin
c4ggvA_ oxidoreductase Chain: A: cytochrome p450 superfamily protein; crystal structure of hmtt involved in himastatin biosynthesis
c4k6lG_ toxin Chain: G: putative pertussis-like toxin subunit; structure of typhoid toxin
c4kjb2_ ribosome Chain: 2: 50s ribosomal protein l34; control of ribosomal subunit rotation by elongation factor g
c4k3vA_ transport protein Chain: A: abc superfamily atp binding cassette transporter, binding structure of staphylococcus aureus mntc
c4bouA_ hydrolase Chain: A: otu domain-containing protein 3; structure of otud3 otu domain
c4lecA_ transferase Chain: A: protein-lysine methyltransferase mettl21a; human methyltransferase-like protein 21a
c4kq7B_ structural genomics, unknown function Chain: B: hypothetical protein; crystal structure of a hypothetical protein (bacuni_00161) from2 bacteroides uniformis atcc 8492 at 1.62 a resolution
c4iopA_ immune system Chain: A: c-type lectin domain family 2 member a; crystal structure of nkp65 bound to its ligand kacl
c4ffjA_ lyase Chain: A: riboflavin biosynthesis protein ribba; the crystal structure of spdhbps from s.pneumoniae
c4kkiA_ transport protein Chain: A: transcobalamin-1; crystal structure of haptocorrin in complex with cncbl
c4g3aA_ cell cycle Chain: A: clip-associating protein; crystal structure of mast/orbit n-terminal domain
c4b9hA_ sugar binding protein Chain: A: extracellular protein 6; cladosporium fulvum lysm effector ecp6 in complex with a2 beta-1,4-linked n-acetyl-d-glucosamine tetramer: i3c heavy3 atom derivative
c3w0lD_ transferase/transferase inhibitor Chain: D: glucokinase regulatory protein; the crystal structure of xenopus glucokinase and glucokinase2 regulatory protein complex
c4kj92_ ribosome Chain: 2: 50s ribosomal protein l34; control of ribosomal subunit rotation by elongation factor g
c4kj52_ ribosome Chain: 2: 50s ribosomal protein l34; control of ribosomal subunit rotation by elongation factor g
c4kj32_ ribosome Chain: 2: 50s ribosomal protein l34; control of ribosomal subunit rotation by elongation factor g
c4kj72_ ribosome Chain: 2: 50s ribosomal protein l34; control of ribosomal subunit rotation by elongation factor g
c4k5yC_ membrane protein, receptor Chain: C: corticotropin-releasing factor receptor 1, t4-lysozyme crystal structure of human corticotropin-releasing factor receptor 12 (crf1r) in complex with the antagonist cp-376395
c3waiA_ transferase, transport protein Chain: A: maltose-binding periplasmic protein, transmembrane crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (afaglb-l, o29867_arcfu) from archaeoglobus3 fulgidus as a mbp fusion
c4k6lF_ toxin Chain: F: cytolethal distending toxin subunit b homolog; structure of typhoid toxin
c3zljD_ dna binding protein/dna Chain: D: dna mismatch repair protein muts; crystal structure of full-length e.coli dna mismatch repair2 protein muts d835r mutant in complex with gt mismatched dna
c4lh9A_ transcription Chain: A: heterocyst differentiation control protein; crystal structure of the refolded hood domain (asp256-gly295) of hetr
c4kix2_ ribosome Chain: 2: 50s ribosomal protein l34; control of ribosomal subunit rotation by elongation factor g
c4bs3A_ hormone Chain: A: insulin a chain; bovin insulin structure determined by in situ crystal2 analysis and sulfur-sad phasing at room temperature
c4jd2B_ structural protein Chain: B: actin-related protein 2; crystal structure of bos taurus arp2/3 complex binding with mus2 musculus gmf
c4bqhA_ transferase Chain: A: udp-n-acetylglucosamine pyrophosphorylase; crystal structure of the uridine diphosphate n-2 acetylglucosamine pyrophosphorylase from trypanosoma3 brucei in complex with inhibitor
c4g4pA_ transport protein Chain: A: amino acid abc transporter, amino acid-binding/permease crystal structure of glutamine-binding protein from enterococcus2 faecalis at 1.5 a


Phyre is for non-commercial use only

Commercial users please contact Michael Sternberg

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D