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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Jul 06

Fold library idPDB HeaderMoleculeTitle
c3ueoB_ peptide binding protein Chain: B: dna topoisomerase 2-binding protein 1; crystal structure of topbp1 brct4/5 domains in complex with a phospho-2 peptide
c3vw0D_ transcription regulator Chain: D: putative regulatory protein; crystal structure of the dequalinum-bound form of ramr2 (transcriptional regulator of tetr family) from salmonella3 typhimurium
c4fo7B_ hydrolase Chain: B: methionine aminopeptidase; pseudomonas aeruginosa metap, in mn form
c4bh5B_ cell cycle Chain: B: murein hydrolase activator envc; lytm domain of envc, an activator of cell wall amidases in2 escherichia coli
c4bk4B_ signaling protein Chain: B: ephrin type-a receptor 4; crystal structure of the human epha4 ectodomain
c4j8cB_ chaperone Chain: B: hsc70-interacting protein; crystal structure of the dimerization domain of hsc70-interacting2 protein
c4bk4A_ signaling protein Chain: A: ephrin type-a receptor 4; crystal structure of the human epha4 ectodomain
c4jmeA_ unknown function Chain: A: putative uncharacterized protein mppr; enduracididine biosynthesis enzyme mppr complexed with 2-keto-2 enduracididine
c4l8kB_ hydrolase Chain: B: putative peptidase; crystal structure of a putative peptidase (parmer_02772) from2 parabacteroides merdae atcc 43184 at 2.26 a resolution
c4gpkI_ transcription, peptide binding protein Chain: I: nprr; crystal structure of nprr in complex with its cognate peptide nprx
c4k0qJ_ ribosome Chain: J: 50s ribosomal protein l10; crystal structure of thermus thermophilus 70s containing trnas and2 mrna stop codon with pseudouridine
c3w15B_ protein transport Chain: B: peroxisomal membrane protein pex21; structure of peroxisomal targeting signal 2 (pts2) of saccharomyces2 cerevisiae 3-ketoacyl-coa thiolase in complex with pex7p and pex21p
c3w80E_ hormone Chain: E: insulin; crystal structure of dodecamer human insulin with double c-axis length2 of the hexamer 2 zn insulin cell
c4kbue_ ribosome/antibiotic Chain: E: 50s ribosomal protein l3; 70s ribosome translocation intermediate gdpnp-ii containing elongation2 factor efg/gdpnp, mrna, and trna bound in the pe*/e state. this entry3 contains 50s ribosomal subunit a. the full asymmetric unit also4 contains pdb entries 4kbt (30s subunit a), 4kbv (30s subunit b), and5 4kbw (50s subunit b).
c4kh9B_ structural genomics, unknown function Chain: B: hypothetical protein; crystal structure of a hypothetical protein (lpg0956) from legionella2 pneumophila subsp. pneumophila str. philadelphia 1 at 2.00 a3 resolution
c4kbwe_ ribosome/antibiotic Chain: E: 50s ribosomal protein l3; 70s ribosome translocation intermediate gdpnp-ii containing elongation2 factor efg/gdpnp, mrna, and trna bound in the pe*/e state. this entry3 contains 50s ribosomal subunit b. the full asymmetric unit also4 contains pdb entries 4kbv (30s subunit b), 4kbt (30s subunit a), and5 4kbu (50s subunit a).
c4bkxA_ transcription Chain: A: metastasis-associated protein mta1; the structure of hdac1 in complex with the dimeric elm2-sant domain2 of mta1 from the nurd complex
c4kdbe_ ribosome/antibiotic Chain: E: 50s ribosomal protein l3; 70s ribosome translocation intermediate fa-3.6a containing elongation2 factor efg/fusidic acid/gdp, mrna, and trna bound in the pe*/e state.3 this entry contains the 50s ribosomal subunit b. the 30s subunit a4 can be found in 4kda. molecule a in the same asymmetric unit is5 deposited as 4kd8 (30s) and 4kd9 (50s).
c4kkdB_ hydrolase Chain: B: mannan-binding lectin serine protease 1; structure of a protease
c3w7zC_ hormone Chain: C: insulin; 1.15a structure of human 2zn insulin at 293k
c2lv5A_ unknown function Chain: A: uncharacterized protein; nmr solution structure of pa1075 from pseudomonas aeruginosa
c4l1mB_ ligase Chain: B: e3 ubiquitin-protein ligase herc2; structure of the first rcc1-like domain of herc2
c4j8dC_ chaperone Chain: C: hsc70-interacting protein; middle domain of hsc70-interacting protein, crystal form ii
c3w80G_ hormone Chain: G: insulin; crystal structure of dodecamer human insulin with double c-axis length2 of the hexamer 2 zn insulin cell
c4fzxC_ hydrolase/dna Chain: C: exodeoxyribonuclease 10; exonuclease x in complex with 3' overhanging duplex dna
c4kmfA_ transferase/dna Chain: A: interferon-inducible and double-stranded-dependent eif- crystal structure of zalpha domain from carassius auratus pkz in2 complex with z-dna
c4kw2A_ isomerase Chain: A: uncharacterized protein; crystal structure of a putative uncharacterized protein (bdi_1873)2 from parabacteroides distasonis atcc 8503 at 2.32 a resolution
c4l7aB_ structural genomics, unknown function Chain: B: uncharacterized protein; crystal structure of a hypothetical protein (baccac_01431) from2 bacteroides caccae atcc 43185 at 2.10 a resolution
c4l3tB_ hydrolase Chain: B: presequence protease, mitochondrial; crystal structure of substrate-free human presequence protease
c4k0qC_ ribosome Chain: C: 50s ribosomal protein l1; crystal structure of thermus thermophilus 70s containing trnas and2 mrna stop codon with pseudouridine
c4b0aA_ transcription Chain: A: transcription initiation factor tfiid subunit 1, linker, the high-resolution structure of ytbp-ytaf1 identifies2 conserved and competing interaction surfaces in3 transcriptional activation
c4l6wB_ ligase Chain: B: probable propionyl-coa carboxylase beta chain 6; carboxyltransferase subunit (accd6) of mycobacterium tuberculosis2 acetyl-coa carboxylase
c4kdke_ ribosome Chain: E: 50s ribosomal protein l3; 70s ribosome translocation intermediate fa-4.2a containing elongation2 factor efg/fusidic acid/gdp, mrna, and trna bound in the pe*/e state.3 this entry contains the 50s ribosomal subunit b. the 30s subunit b4 can be found in 4kdj. molecule a in the same asymmetric unit is5 deposited as 4kdg (30s) and 4kdh (50s).
c3ucsB_ chaperone Chain: B: chaperone-modulator protein cbpm; crystal structure of the complex between cbpa j-domain and cbpm
c2lqbA_ hydrolase Chain: A: copper-transporting atpase 2; metal binding repeat 2 of the wilson disease protein (atp7b)
c4l6wA_ ligase Chain: A: probable propionyl-coa carboxylase beta chain 6; carboxyltransferase subunit (accd6) of mycobacterium tuberculosis2 acetyl-coa carboxylase
c4aygB_ transferase Chain: B: glucansucrase; lactobacillus reuteri n-terminally truncated glucansucrase2 gtf180 in orthorhombic apo-form
c4k0lU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of thermus thermophilus 70s in complex with trnas2 and mrna containing a pseudouridine in a stop codon
c4j8cA_ chaperone Chain: A: hsc70-interacting protein; crystal structure of the dimerization domain of hsc70-interacting2 protein
c2lzoA_ toxin Chain: A: ugtx; spatial stucture of pi-anmtx ugr 9a-1
c3w7zA_ hormone Chain: A: insulin; 1.15a structure of human 2zn insulin at 293k
c4j8fA_ chaperone Chain: A: heat shock 70 kda protein 1a/1b, hsc70-interacting protein; crystal structure of a fusion protein containing the nbd of hsp70 and2 the middle domain of hip
c4kfkU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the 70s ribosome bound with the q253p mutant of2 release factor rf2. 30s of the b subunit
c4h54B_ transferase Chain: B: diguanylate cyclase ydeh; crystal structure of the diguanylate cyclase dgcz
c4kd9e_ ribosome/antibiotic Chain: E: 50s ribosomal protein l3; 70s ribosome translocation intermediate fa-3.6a containing elongation2 factor efg/fusidic acid/gdp, mrna, and trna bound in the pe*/e state.3 this entry contains the 50s ribosomal subunit a. the 30s subunit a4 can be found in 4kd8. molecule b in the same asymmetric unit is5 deposited as 4kda (30s) and 4kdb (50s).
c3w7yC_ hormone Chain: C: insulin; 0.92a structure of 2zn human insulin at 100k
c4j7oA_ cell invasion Chain: A: putative surface cell antigen sca2; structure of the n-terminal repeat domain of rickettsia sca2
c4k0mC_ ribosome Chain: C: 50s ribosomal protein l1; crystal structure of thermus thermophilus 70s containing trnas and2 mrna stop codon with pseudouridine
c4ldnA_ transferase Chain: A: purine nucleoside phosphorylase deod-type; crystal structure of a putative purine nucleoside phosphorylase from2 vibrio fischeri es114 (target nysgrc-029521)
c4kd2e_ ribosome/antibiotic Chain: E: 50s ribosomal protein l3; 70s ribosome translocation intermediate gdpnp-i containing elongation2 factor efg/gdpnp, mrna, and trna bound in the pe*/e state. this entry3 contains the 50s ribosomal subunit b. the 30s subunit b can be found4 in 4kd0. molecule a in the same asymmetric unit is deposited as 4kcy5 (30s) and 4kcz (50s).
c2m67A_ transport protein Chain: A: merf; full-length mercury transporter protein merf in lipid bilayer2 membranes
c4finA_ atp-binding protein Chain: A: etta (yjjk) abcf family protein; crystal structure of etta (formerly yjjk) - an e. coli abc-type atpase
c4l8jA_ transport protein Chain: A: putative efflux transporter; crystal structure of a putative efflux transporter (bacegg_01895) from2 bacteroides eggerthii dsm 20697 at 2.06 a resolution
c4k0pU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of thermus thermophilus 70s containing trnas and2 mrna stop codon with pseudouridine
c3w15A_ protein transport Chain: A: peroxisomal targeting signal 2 receptor; structure of peroxisomal targeting signal 2 (pts2) of saccharomyces2 cerevisiae 3-ketoacyl-coa thiolase in complex with pex7p and pex21p
c3w80A_ hormone Chain: A: insulin; crystal structure of dodecamer human insulin with double c-axis length2 of the hexamer 2 zn insulin cell
c4kdhe_ ribosome Chain: E: 50s ribosomal protein l3; 70s ribosome translocation intermediate fa-4.2a containing elongation2 factor efg/fusidic acid/gdp, mrna, and trna bound in the pe*/e state.3 this entry contains the 50s ribosomal subunit a. the 30s subunit a4 can be found in 4kdg. molecule b in the same asymmetric unit is5 deposited as 4kdj (30s) and 4kdk (50s).
c3w8hB_ protein binding/transferase Chain: B: serine/threonine-protein kinase 25; crystal structure of ccm3 in complex with the c-terminal regulatory2 domain of stk25
c4fguB_ hydrolase Chain: B: legumain; crystal structure of prolegumain
c3w80C_ hormone Chain: C: insulin; crystal structure of dodecamer human insulin with double c-axis length2 of the hexamer 2 zn insulin cell
c4gftB_ protein binding Chain: B: nanobody; malaria invasion machinery protein-nanobody complex
c3w7yA_ hormone Chain: A: insulin; 0.92a structure of 2zn human insulin at 100k
c4k0mJ_ ribosome Chain: J: 50s ribosomal protein l10; crystal structure of thermus thermophilus 70s containing trnas and2 mrna stop codon with pseudouridine
c4kfhU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of the 70s ribosome bound with the q253p mutant of2 release factor rf2. 30s of the a subunit
c4kcze_ ribosome/antibiotic Chain: E: 50s ribosomal protein l3; 70s ribosome translocation intermediate gdpnp-i containing elongation2 factor efg/gdpnp, mrna, and trna bound in the pe*/e state.this entry3 contains the 50s ribosomal subunit a. the 30s subunit a can be found4 in 4kcy. molecule b in the same asymmetric unit is deposited as 4kd05 (30s) and 4kd2 (50s).g1 50s ribosomal subunit i


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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