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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Jun 15

Fold library idPDB HeaderMoleculeTitle
c4bq7D_ cell adhesion Chain: D: rgm domain family member b; crystal structure of the rgmb-neo1 complex form 2
c4bl6A_ protein transport Chain: A: protein bicaudal d; bicaudal-d uses a parallel, homodimeric coiled coil with heterotypic2 registry to co-ordinate recruitment of cargos to dynein
c3zhnA_ toxin Chain: A: pa_0080; crystal structure of the t6ss lipoprotein tssj1 from2 pseudomonas aeruginosa
c4j43A_ oxidoreductase Chain: A: pyld; pyld holoenzyme
c4i5eC_ oxidoreductase Chain: C: alclohol dehydrogenase/short-chain dehydrogenase; crystal structure of ralstonia sp. alcohol dehydrogenase in complex2 with nadp+
c3j3wJ_ ribosome Chain: J: 50s ribosomal protein l13; atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
c4kvhA_ unknown function Chain: A: ketosteroid isomerase fold protein hmuk_0747; crystal structure of ketosteroid isomerase fold protein hmuk_0747
c2m5zA_ antimicrobial protein Chain: A: enterocin jsa; enterocin 7a
c4jcqU_ hydrolase Chain: U: atp-dependent clp protease proteolytic subunit; clpp1 from listeria monocytogenes
c3j3wX_ ribosome Chain: X: 50s ribosomal protein l29; atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
c4iadS_ transferase/peptide Chain: S: phosphorylated peptide psp20; low temperature x-ray structure of camp dependent protein kinase a in2 compelx with high mg2+ concentration, adp and phosphorylated peptide3 psp20
c2ltuA_ transferase Chain: A: 5'-amp-activated protein kinase catalytic subunit alpha-2; solution structure of autoinhibitory domain of human amp-activated2 protein kinase catalytic subunit
c4gblC_ hormone Chain: C: insulin a chain; crystal structure of aspart insulin at ph 8.5
c3j3vY_ ribosome Chain: Y: 50s ribosomal protein l30; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c2m6xC_ membrane protein Chain: C: p7; structure of the p7 channel of hepatitis c virus, genotype 5a
c3j3vD_ ribosome Chain: D: 50s ribosomal protein l3; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c4hapB_ hydrolase Chain: B: gh7 family protein; crystal structure of a gh7 family cellobiohydrolase from limnoria2 quadripunctata in complex with cellobiose
c3j3vR_ ribosome Chain: R: 50s ribosomal protein l21; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c2lxnA_ ligase Chain: A: gmp synthase [glutamine-hydrolyzing] subunit a; solution nmr structure of glutamine amido transferase subunit of2 gaunosine monophosphate synthetase from methanocaldococcus jannaschii
c4ksiA_ hydrolase Chain: A: leucine aminopeptidase 1, chloroplastic; crystal structure analysis of the acidic leucine aminopeptidase of2 tomato
c3j3v0_ ribosome Chain: 0: 50s ribosomal protein l32; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c4jixB_ hydrolase Chain: B: uncharacterized protein mj0123; crystal structure of the metallopeptidase zymogen of2 methanocaldococcus jannaschii jannalysin
c4fg3C_ hormone Chain: C: insulin; crystal structure analysis of the human insulin
c4bqqB_ hydrolase Chain: B: integrase; protein crystal structure of the n-terminal and recombinase2 domains of the streptomyces temperate phage serine3 recombinase, fc31 integrase.
c4f0bB_ transferase Chain: B: thiol transferase; crystal structure of the glutathione transferase ure2p1 from2 phanerochaete chrysosporium.
c4fdxB_ isomerase Chain: B: 4-oxalocrotonase tautomerase isozyme; kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
c4jvuA_ protein binding Chain: A: ig mu chain c region membrane-bound form; igm c2-domain from mouse
c4gaaA_ hydrolase/hydrolase inhibitor Chain: A: mgc78867 protein; structure of leukotriene a4 hydrolase from xenopus laevis complexed2 with inhibitor bestatin
c3j3wQ_ ribosome Chain: Q: 50s ribosomal protein l20; atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
c4jvwD_ protein binding Chain: D: ig mu chain c region secreted form; igm c4-domain from mouse
c3j3vN_ ribosome Chain: N: 50s ribosomal protein l17; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c4iayS_ transferase/peptide Chain: S: phosphorylated pseudo-substrate peptide psp20; room temperature x-ray structure of camp dependent protein kinase a in2 complex with high sr2+ concentration, adp and phosphorylated peptide3 psp20
c3w1vA_ lyase Chain: A: capsular polysaccharide synthesis enzyme cap8e; crystal structure of capsular polysaccharide synthesizing enzyme cape2 from staphylococcus aureus in complex with inihibitor
c3j3v5_ ribosome Chain: 5: 50s ribosomal protein l1; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c4gbkA_ hormone Chain: A: insulin a chain; crystal structure of aspart insulin at ph 8.5
c3j3vL_ ribosome Chain: L: 50s ribosomal protein l15; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c4ijaA_ protein binding Chain: A: xylr protein; structure of s. aureus methicillin resistance factor mecr2
c2lxtC_ transferase/protein binding Chain: C: cyclic amp-responsive element-binding protein 1; allosteric communication in the kix domain proceeds through dynamic2 re-packing of the hydrophobic core
c2m7aA_ unknown function Chain: A: uncharacterized protein; enteropathogenic escherichia coli 0111:h- str. 11128 orf ec0111_11192 similar to bacteriophage lambda ea8.5
c4jiuA_ hydrolase Chain: A: putative uncharacterized protein; crystal structure of the metallopeptidase zymogen of pyrococcus abyssi2 abylysin
c4iafS_ transferase/peptide Chain: S: phosphorylated pseudo-substrate peptide psp20; room temperature x-ray structure of camp dependent protein kinase a in2 complex with high mg2+ concentration, adp and phosphorylated peptide3 psp20
c4gbcA_ hormone Chain: A: insulin a chain; crystal structure of aspart insulin at ph 6.5
c4b16A_ hydrolase Chain: A: chitinase like lectin; crystal structure of tamarind chitinase like lectin (tcll)2 complexed with n-acetyl glucosamine (glcnac)
c4jzwM_ viral protein/inhibitor Chain: M: cd4-mimetic miniprotein m48u1; crystal structure of cd4-mimetic miniprotein m48u1 in complex with2 hiv-1 yu2 gp120 in p212121 space group
c3w4sB_ transferase Chain: B: carbohydrate/pyrimidine kinase, pfkb family; myo-inositol kinase from thermococcus kodakarensis
c4gblA_ hormone Chain: A: insulin a chain; crystal structure of aspart insulin at ph 8.5
c3j3vE_ ribosome Chain: E: 50s ribosomal protein l4; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c3j3vU_ ribosome Chain: U: 50s ribosomal protein l24; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c3zbfA_ transferase Chain: A: proto-oncogene tyrosine-protein kinase ros; structure of human ros1 kinase domain in complex with crizotinib
c4hjdA_ unknown function Chain: A: gcn4pli(alpha/beta/acyclic gamma); gcn4pli derivative with alpha/beta/acyclic-gamma amino acid2 substitution pattern
c4f0cA_ transferase Chain: A: glutathione transferase; crystal structure of the glutathione transferase ure2p5 from2 phanerochaete chrysosporium
c3j3wS_ ribosome Chain: S: 50s ribosomal protein l22; atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
c4fg3A_ hormone Chain: A: insulin; crystal structure analysis of the human insulin
c4iacS_ transferase/peptide Chain: S: peptide sp20; x-ray structure of camp dependent protein kinase a in compelx with2 high mg2+ concentration, amp-pcp and pseudo-substrate peptide sp20
c4k73A_ transferase Chain: A: l,d-transpeptidase; x-ray crystal structure of an l,d-transpeptidase from mycobacterium2 tuberculosis h37rv
c4jzzR_ viral protein/inhibitor Chain: R: cd4-mimetic miniprotein m48u1; crystal structure of cd4-mimetic miniprotein m48u1 in complex with2 hiv-1 yu2 gp120 in c2221 space group
c4jzwR_ viral protein/inhibitor Chain: R: cd4-mimetic miniprotein m48u1; crystal structure of cd4-mimetic miniprotein m48u1 in complex with2 hiv-1 yu2 gp120 in p212121 space group
c4bk0A_ transcription Chain: A: atp-dependent dna helicase q5; crystal structure of the kix domain of human recql5 (domain-2 swapped dimer)
c4bm5A_ protein transport Chain: A: similar to chloroplast inner membrane protein tic110; chloroplast inner membrane protein tic110
c4gbnA_ hormone Chain: A: insulin a chain; crystal structure of aspart insulin at ph 6.5
c4hjdB_ unknown function Chain: B: gcn4pli(alpha/beta/acyclic gamma); gcn4pli derivative with alpha/beta/acyclic-gamma amino acid2 substitution pattern
c4gbkC_ hormone Chain: C: insulin a chain; crystal structure of aspart insulin at ph 8.5
c4iaiS_ transferase/peptide Chain: S: phosphorylated pseudo-substrate peptide psp20; x-ray structure of camp dependent protein kinase a in complex with2 high ca2+ concentration, adp and phosphorylated peptide psp20
c4k0dB_ signaling protein Chain: B: periplasmic sensor hybrid histidine kinase; periplasmic sensor domain of sensor histidine kinase, adeh_2942
c4inmV_ structural protein/dna Chain: V: cenp-c; crystal structure of cenp-c in complex with the nucleosome core2 particle
c4gbcC_ hormone Chain: C: insulin a chain; crystal structure of aspart insulin at ph 6.5
c4k92B_ structural protein Chain: B: clip-associating protein 1; a cryptic tog domain with a distinct architecture underlies clasp-2 dependent bipolar spindle formation
c4kqtA_ chaperone Chain: A: putative outer membrane chaperone (omph-like); crystal structure of a putative outer membrane chaperone (omph-like)2 (cc_1914) from caulobacter crescentus cb15 at 2.83 a resolution (psi3 community target, shapiro)
c2m7bA_ unknown function Chain: A: uncharacterized protein; orf pp_3909 from pseudomonas putida kt2440 encoding a protein similar2 to bacteriophage lambda ea8.5
c4inmX_ structural protein/dna Chain: X: cenp-c; crystal structure of cenp-c in complex with the nucleosome core2 particle
c4iazS_ transferase/peptide Chain: S: phosphorylated pseudo-substrate peptide psp20; structure of camp dependent protein kinase a in complex with high ba2+2 concentration, adp and phosphorylated peptide psp20
c4iakS_ transferase/peptide Chain: S: phosphorylated pseudo-substrate peptide psp20; low temperature x-ray structure of camp dependent protein kinase a in2 complex with high sr2+ concentration, adp and phosphorylated peptide3 psp20
c3j3vT_ ribosome Chain: T: 50s ribosomal protein l23; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c3j3vP_ ribosome Chain: P: 50s ribosomal protein l19; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c4gbiC_ hormone Chain: C: insulin a chain; crystal structure of aspart insulin at ph 6.5
c2m60A_ antimicrobial protein Chain: A: enterocin jsb; enterocin 7b
c4k0aR_ viral protein/inhibitor Chain: R: cd4-mimetic miniprotein m48u7; crystal structure of cd4-mimetic miniprotein m48u7 in complex with2 hiv-1 yu2 gp120
c3j3v2_ ribosome Chain: 2: 50s ribosomal protein l34; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c4gbnC_ hormone Chain: C: insulin a chain; crystal structure of aspart insulin at ph 6.5
c4ht1T_ immune system Chain: T: tumor necrosis factor ligand superfamily member 12; human tweak in complex with the fab fragment of a neutralizing2 antibody
c3j3wC_ ribosome Chain: C: 50s ribosomal protein l2; atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
c3j3vO_ ribosome Chain: O: 50s ribosomal protein l18; atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
c4gbiA_ hormone Chain: A: insulin a chain; crystal structure of aspart insulin at ph 6.5
c4ba8A_ immune system Chain: A: ig mu chain c region secreted form; high resolution nmr structure of the c mu3 domain from igm


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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