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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 May 25

Fold library idPDB HeaderMoleculeTitle
c4k8vA_ transferase Chain: A: cyclic gmp-amp synthase; structure of cyclic gmp-amp synthase (cgas)
c4j0dB_ hydrolase Chain: B: tannase; tannin acyl hydrolase from lactobacillus plantarum (cadmium)
c4j4vD_ viral protein Chain: D: nucleocapsid protein; pentameric sftsvn with su
c4f4tA_ hormone Chain: A: insulin a chain; human insulin
c4f51C_ hormone Chain: C: insulin a chain; human insulin
c4k6fD_ oxidoreductase Chain: D: putative acetoacetyl-coa reductase; x-ray crystal structure of a putative acetoacetyl-coa reductase from2 burkholderia cenocepacia bound to the co-factor nadp
c4kndA_ oxidoreductase Chain: A: thioredoxin; thioredoxin from anaeromyxobacter dehalogenans.
c4incA_ hydrolase Chain: A: histidine triad nucleotide-binding protein 2, human histidine triad nucleotide binding protein 2
c3w6dB_ hydrolase Chain: B: lysozyme-like chitinolytic enzyme; crystal structure of catalytic domain of chitinase from ralstonia sp.2 a-471 (e141q) in complex with tetrasaccharide
c4j4aH_ de novo protein Chain: H: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c4kfuC_ hydrolase Chain: C: genome packaging ntpase b204; structure of the genome packaging ntpase b204 from sulfolobus turreted2 icosahedral virus 2 in complex with amppcp
c4hl6D_ transferase Chain: D: uncharacterized protein yfde; yfde from escherichia coli
c3w9aC_ hydrolase Chain: C: putative uncharacterized protein; crystal structure of the catalytic domain of the glycoside hydrolase2 family 131 protein from coprinopsis cinerea
c4j4aK_ de novo protein Chain: K: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c3zfnA_ hydrolase Chain: A: n-terminal protease npro; crystal structure of product-like, processed n-terminal protease npro
c3j1wU_ cell invasion Chain: U: protein prgh; a refined model of the prototypical salmonella typhimurium t3ss basal2 body reveals the molecular basis for its assembly
c4k95G_ ligase Chain: G: e3 ubiquitin-protein ligase parkin; crystal structure of parkin
c2lt2A_ unknown function Chain: A: putative uncharacterized protein; nmr structure of ba42 protein from the psychrophilic bacteria bizionia2 argentinensis sp. nov.
c2ynkA_ membrane protein Chain: A: wzi; wzi, an outer membrane protein involved in group 1 capsule assembly2 in escherichia coli, is a carbohydrate binding beta-barrel
c4jx0A_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (bf3416) from bacteroides2 fragilis nctc 9343 at 2.90 a resolution
c2m48A_ ligase Chain: A: sd01679p; solution structure of ibr-ring2 tandem domain from parkin
c4kkmB_ transferase Chain: B: polyprenyl synthetase; crystal structure of a fpp/gfpp synthase (target efi-501952) from2 zymomonas mobilis, apo structure
c4f7rA_ signaling protein Chain: A: 14-3-3 protein; crystal structure of 14-3-3 protein from giardia intestinalis
c4j75B_ ligase Chain: B: tryptophanyl-trna synthetase; crystal structure of a parasite trna synthetase, product-bound
c4f8fA_ hormone Chain: A: insulin a chain; human insulin
c3zn5D_ viral protein Chain: D: vp16; vp16, a capsid protein of bacteriophage p23-77 (vp16-virus-derived)
c3w4pA_ hydrolase Chain: A: beta-lactamase; crystal structure of peni beta-lactamase from burkholderia2 pseudomallei at ph7.5
c4j4aB_ de novo protein Chain: B: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c4eyyQ_ protein binding Chain: Q: icmq; crystal structure of the icmr-icmq complex from legionella pneumophila
c4f51A_ hormone Chain: A: insulin a chain; human insulin
c4kemB_ lyase Chain: B: mandelate racemase/muconate lactonizing enzyme; crystal structure of a tartrate dehydratase from azospirillum, target2 efi-502395, with bound mg and a putative acrylate ion, ordered active3 site
c3vv1B_ sugar binding protein Chain: B: protein lec-6; crystal structure of caenorhabditis elegans galectin lec-6
c4dkmH_ fluorescent protein Chain: H: amphioxus green fluorescent protein, gfpc1a; crystal structure of amphioxus gfpc1a
c4ga5H_ transferase Chain: H: putative thymidine phosphorylase; crystal structure of amp phosphorylase c-terminal deletion mutant in2 the apo-form
c4j38A_ immune system Chain: A: outer surface protein e; structure of borrelia burgdorferi outer surface protein e in complex2 with factor h domains 19-20
c2m3lA_ oncoprotein Chain: A: protein e6; solution structure of the c-terminal zinc-binding domain of hpv512 oncoprotein e6
c4k3zA_ oxidoreductase Chain: A: d-erythrulose 4-phosphate dehydrogenase; crystal structure of d-erythrulose 4-phosphate dehydrogenase from2 brucella melitensis, solved by iodide sad
c4f8lA_ cell adhesion/inhibitor Chain: A: ph 6 antigen; x-ray structure of psaa from yersinia pestis, in complex with2 galactose and aebsf
c4ilvB_ oxidoreductase Chain: B: intradiol ring-cleavage dioxygenase; structure of the dioxygenase domain of sacte_2871, a novel dioxygenase2 carbohydrate-binding protein fusion from the cellulolytic bacterium3 streptomyces sp. sirexaa-e
c4j7hA_ biosynthetic protein Chain: A: evaa 2,3-dehydratase; crystal structure of evaa, a 2,3-dehydratase in complex with dtdp-2 benzene and dtdp-rhamnose
c4j4wA_ viral protein Chain: A: nucleocapsid; crystal structure of buevn
c3w3aO_ hydrolase Chain: O: v-type atp synthase subunit d; crystal structure of v1-atpase at 3.9 angstrom resolution
c3zguA_ hydrolase Chain: A: cyanuric acid amidohydrolase; the 'tricorne' fold: a novel fold for a unique family of ring-opening2 amidases.
c4gzcA_ endocytosis, lipid binding protein Chain: A: epsin-2; crystal structure of yeast ent2 enth domain
c3zmnA_ viral protein Chain: A: vp17; vp17, a capsid protein of bacteriophage p23-77
c4j4aD_ de novo protein Chain: D: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c3w0dA_ hydrolase inhibitor Chain: A: elastase inhibitor afuei; structure of elastase inhibitor afuei (cyrstal form i)
c4bbaA_ protein-binding protein Chain: A: glucokinase regulatory protein; crystal structure of glucokinase regulatory protein2 complexed to phosphate
c4dknB_ fluorescent protein Chain: B: amphioxus green fluorescent protein, gfpa1; crystal structure of amphioxus green fluorescent protein, gfpa1
c4kkpA_ structural protein Chain: A: rbma protein; crystal structure of vibrio cholerae rbma (crystal form 2)
c4ka0C_ oxidoreductase Chain: C: putative thiol-disulfide oxidoreductase; crystal structure of a putative thiol-disulfide oxidoreductase from2 bacteroides vulgatus (target nysgrc-011676), space group p21221
c4j15A_ ligase Chain: A: aspartate--trna ligase, cytoplasmic; crystal structure of human cytosolic aspartyl-trna synthetase, a2 component of multi-trna synthetase complex
c4bkwA_ receptor Chain: A: zinc finger fyve domain-containing protein 9; crystal structure of the c-terminal region of human zfyve9
c3vsmA_ lyase activator Chain: A: occlusion-derived virus envelope protein e66; the crystal structure of novel chondroition lyase odv-e66, baculovirus2 envelope protein
c4k2xB_ oxidoreductase, flavoprotein Chain: B: polyketide oxygenase/hydroxylase; oxys anhydrotetracycline hydroxylase from streptomyces rimosus
c4ke4A_ transferase Chain: A: hydroxycinnamoyl-coa:shikimate hydroxycinnamoyl elucidation of the structure and reaction mechanism of sorghum bicolor2 hydroxycinnamoyltransferase and its structural relationship to other3 coa-dependent transferases and synthases
c4bmaB_ transferase Chain: B: udp-n-acetylglucosamine pyrophosphorylase; structural of aspergillus fumigatus udp-n-acetylglucosamine2 pyrophosphorylase
c2ltfA_ viral protein Chain: A: tail protein x; the solution structure of phage p2 gpx
c4f15D_ immune system Chain: D: hemagglutinin; molecular basis of infectivity of 2009 pandemic h1n1 influenza a2 viruses
c4f8fC_ hormone Chain: C: insulin a chain; human insulin
c2lwfA_ hydrolase Chain: A: monothiol glutaredoxin-s16, chloroplastic; structure of n-terminal domain of a plant grx
c4kf9A_ transferase Chain: A: glutathione s-transferase protein; crystal structure of a glutathione transferase family member from2 ralstonia solanacearum, target efi-501780, with bound gsh coordinated3 to a zinc ion, ordered active site
c3w4qC_ hydrolase Chain: C: beta-lactamase; crystal structure of pena beta-lactamase from burkholderia multivorans2 at ph4.2
c4kdsA_ hydrolase inhibitor Chain: A: plasminogen activator inhibitor 1; crystal structure of latent rainbow trout plasminogen activator2 inhibitor 1 (pai-1)
c2m65A_ hydrolase Chain: A: probable dna dc->du-editing enzyme apobec-3a; nmr structure of human restriction factor apobec3a
c4f4tC_ hormone Chain: C: insulin a chain; human insulin
c2m7oA_ structural genomics, unknown function Chain: A: uncharacterized protein; nmr structure of the protein np_346341.1 from streptococcus pneumoniae
c3zoqA_ hydrolase/viral protein Chain: A: uracil-dna glycosylase; structure of bsudg-p56 complex
c4j4aI_ de novo protein Chain: I: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c4j4aJ_ de novo protein Chain: J: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c4f7kA_ oxidoreductase Chain: A: laccase; crystal structure of lac15 from a marine microbial metagenome
c2lrbA_ protein binding Chain: A: actin-depolymerizing factor 1, isoforms a; solution structure of adf like unc-60a protein of caenorhabditis2 elegans
c4f4vC_ hormone Chain: C: insulin a chain; human insulin
c2m72A_ unknown function Chain: A: uncharacterized thioredoxin-like protein; solution structure of uncharacterized thioredoxin-like protein pg_21752 from porphyromonas gingivalis
c4j4aG_ de novo protein Chain: G: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c4klkA_ unknown function Chain: A: phage-related protein duf2815; phage-related protein duf2815 from enterococcus faecalis
c4j4aL_ de novo protein Chain: L: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c4kh8A_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (ef0376) from enterococcus2 faecalis v583 at 1.60 a resolution
c4bmfA_ hydrolase Chain: A: endoglucanase eg-1; solution structure of the cellulose-binding domain of2 endoglucanase i from trichoderma reesei and its3 interaction with cello-oligosaccharides
c4j4aF_ de novo protein Chain: F: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c4j4aA_ de novo protein Chain: A: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c4f4vA_ hormone Chain: A: insulin a chain; human insulin
c4j4aE_ de novo protein Chain: E: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c2m71A_ translation Chain: A: translation initiation factor if-3; solution structure of the a c-terminal domain of translation2 initiation factor if-3 from campylobacter jejuni
c4jo8B_ immune system/viral protein Chain: B: killer cell lectin-like receptor 8; immune receptor-viral target
c4j4aC_ de novo protein Chain: C: cortexillin-1; crystal structure of engineered trimeric cortexillin-1 coiled-coil2 variant
c4kmsB_ oxidoreductase Chain: B: acetoacetyl-coa reductase; crystal structure of acetoacetyl-coa reductase from rickettsia felis
c4kpkA_ isomerase Chain: A: enoyl-coa hydratase/isomerase; crystal structure of a enoyl-coa hydratase from shewanella pealeana2 atcc 700345
c4fbzA_ membrane protein Chain: A: deltarhodopsin; crystal structure of deltarhodopsin from haloterrigena thermotolerans


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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