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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 May 11

Fold library idPDB HeaderMoleculeTitle
c4if4A_ transcription Chain: A: response regulator protein vrar; crystal structure of the magnesium and beryllofluoride-activated vrar2 from staphylococcus aureus
c4hxgJ_ hydrolase Chain: J: putative uncharacterized protein ph0594; pyrococcus horikoshii acylaminoacyl peptidase (orthorhombic crystal2 form)
c4gu8G_ sugar binding protein Chain: G: burkholderia oklahomensis agglutinin (boa); crystal structure of burkholderia oklahomensis agglutinin (boa)
c4bijD_ hydrolase Chain: D: dna maturase b; threading model of t7 large terminase
c4k25A_ biosynthetic protein Chain: A: probable trna threonylcarbamoyladenosine biosynthesis crystal structure of yeast qri7 homodimer
c4jc8A_ protein binding Chain: A: hops component vps33; crystal structure of hops component vps33 from chaetomium thermophilum
c4hf1B_ transcription/dna Chain: B: hth-type transcriptional regulator iscr; crystal structure of iscr bound to its promoter
c4extB_ transferase/transcription Chain: B: peptide from dna polymerase zeta catalytic subunit; structure of polymerase-interacting domain of human rev1 in complex2 with translesional synthesis polymerase zeta
c4k39A_ oxidoreductase Chain: A: anaerobic sulfatase-maturating enzyme; native ansmecpe with bound adomet and cp18cys peptide
c4jicB_ oxidoreductase Chain: B: gtn reductase; glycerol trinitrate reductase nera from agrobacterium radiobacter
c4k2wA_ oxidoreductase Chain: A: superoxide dismutase; x-ray crystal structure of superoxide dismutase from babesia bovis2 solved by sulfur/zinc sad
c4j2yA_ hydrolase/hydrolase inhibitor Chain: A: trypsin inhibitor; crystal structure of a plant trypsin inhibitor ecti in complex with2 bovine trypsin.
c4axzA_ membrane protein Chain: A: putative antigen p35; borrelia burgdorferi outer surface lipoprotein bba73
c4jqsC_ structural genomics, unknown function Chain: C: hypothetical protein; crystal structure of a hypothetical protein (bacuni_01602) from2 bacteroides uniformis atcc 8492 at 2.30 a resolution
c4f07A_ oxidoreductase Chain: A: styrene monooxygenase component 2; structure of the styrene monooxygenase flavin reductase (smob) from2 pseudomonas putida s12
c4jvsA_ hydrolase activator/protein transport Chain: A: putative uncharacterized protein; crystal structure of lepb gap domain from legionella drancourtii in2 complex with rab1-gdp and alf3
c4i5nE_ hydrolase/toxin Chain: E: serine/threonine-protein phosphatase 2a regulatory subunit structural mechanism of trimeric pp2a holoenzyme involving pr70:2 insight for cdc6 dephosphorylation
c4jn6B_ lyase/oxidoreductase Chain: B: acetaldehyde dehydrogenase; crystal structure of the aldolase-dehydrogenase complex from2 mycobacterium tuberculosis hrv37
c4f1gA_ hormone Chain: A: insulin a chain; human insulin
c4gycB_ membrane protein Chain: B: sensory rhodopsin ii transducer; structure of the srii(d75n mutant)/htrii complex in i212121 space2 group ("u" shape)
c4i5wA_ transferase Chain: A: 5',5'''-p-1,p-4-tetraphosphate phosphorylase 2; crystal structure of yeast ap4a phosphorylase apa2 in complex with amp
c4f1bA_ hormone Chain: A: insulin a chain; human insulin
c4gc8C_ motor protein Chain: C: flagellar motor switch protein; crystal structure of flim middle domain from h. pylori
c4iwyA_ ligase Chain: A: ribosomal protein s6 modification protein; semet-substituted rimk structure
c4i7hA_ transcription Chain: A: peroxide stress sensing regulator; structural basis for peroxide sensing and gene regulation by perr from2 streptococcus pyogenes
c4jw1A_ hydrolase activator Chain: A: effector protein b; crystal structure of n-terminal 618-residue fragment of lepb from2 legionella pneumophila
c4k1cB_ membrane protein/metal transport Chain: B: vacuolar calcium ion transporter; vcx1 calcium/proton exchanger
c4hjjH_ immune system Chain: H: anti-il12 anti-il18 dfab heavy chain; structure reveals function of the dual variable domain immunoglobulin2 (dvd-ig) molecule
c4i4zE_ lyase Chain: E: naphthoate synthase; synechocystis sp. pcc 6803 1,4-dihydroxy-2-naphthoyl-coenzyme a2 synthase (menb) in complex with salicylyl-coa
c4aruA_ hydrolase Chain: A: histidine acid phosphatase; hafnia alvei phytase in complex with tartrate
c4gdmA_ lyase Chain: A: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate crystal structure of e.coli menh
c4eijA_ replication Chain: A: p protein; structure of the mumps virus phosphoprotein oligomerization domain
c4hgkC_ immune system Chain: C: shark v-nar antibody; shark ignar variable domain
c4jn6C_ lyase/oxidoreductase Chain: C: 4-hydroxy-2-oxovalerate aldolase; crystal structure of the aldolase-dehydrogenase complex from2 mycobacterium tuberculosis hrv37
c4ke3D_ transferase Chain: D: glutathione s-transferase domain; crystal structure of a glutathione transferase family member from2 burkholderia graminis, target efi-507264, no gsh, disordered domains,3 space group p21, form(2)
c4arvB_ hydrolase Chain: B: phytase; yersinia kristensenii phytase apo form
c2m6oA_ transcription Chain: A: uncharacterized protein; the actinobacterial transcription factor rbpa binds to the principal2 sigma subunit of rna polymerase
c4f0oA_ hormone Chain: A: insulin a chain; human insulin
c4hjjL_ immune system Chain: L: anti-il12 anti-il18 dfab light chain; structure reveals function of the dual variable domain immunoglobulin2 (dvd-ig) molecule
c4f0nA_ hormone Chain: A: insulin a chain; human insulin
c4k0vA_ signaling protein/transferase Chain: A: tek tyrosine kinase variant; structural basis for angiopoietin-1 mediated signaling initiation
c4f1aA_ hormone Chain: A: insulin a chain; human insulin
c4bgqA_ transferase Chain: A: cyclin-dependent kinase-like 5; crystal structure of the human cdkl5 kinase domain
c4jw1B_ hydrolase activator Chain: B: effector protein b; crystal structure of n-terminal 618-residue fragment of lepb from2 legionella pneumophila
c4jq6A_ proton transport Chain: A: proteorhodopsin; crystal structure of blue light-absorbing proteorhodopsin from med122 at 2.3 angstrom
c4fybA_ oxidoreductase Chain: A: thiol:disulfide interchange protein (dsbc); structural and functional characterizations of a thioredoxin-fold2 protein from helicobacter pylori
c4f1dC_ hormone Chain: C: insulin a chain; human insulin
c4f1cC_ hormone Chain: C: insulin a chain; human insulin
c4jx2B_ structural genomics, unknown function Chain: B: hypothetical protein; crystal structure of a hypothetical protein (lpg1979) from legionella2 pneumophila subsp. pneumophila str. philadelphia 1 at 2.65 a3 resolution
c4ir7A_ transferase Chain: A: long chain fatty acid coa ligase fadd10; crystal structure of mtb fadd10 in complex with dodecanoyl-amp
c2luyA_ dna binding protein Chain: A: meiotic chromosome segregation protein p8b7.28c; solution structure of the tandem zinc finger domain of fission yeast2 stc1
c4f1bC_ hormone Chain: C: insulin a chain; human insulin
c2lwyA_ unknown function Chain: A: bacterial intein-like domain; solution structure of bacterial intein-like domain from clostridium2 thermocellum
c4kd5A_ transport protein Chain: A: abc-type transport system, molybdenum-specific substrate binding domain of putative molybdenum abc transporter from2 clostridium difficile
c4f1fC_ hormone Chain: C: insulin a chain; human insulin
c4f0oC_ hormone Chain: C: insulin a chain; human insulin
c4jvhA_ rna binding protein Chain: A: protein quaking; structure of the star domain of quaking protein in complex with rna
c4f1dA_ hormone Chain: A: insulin a chain; human insulin
c4f1cA_ hormone Chain: A: insulin a chain; human insulin
c4ewcA_ rna binding protein Chain: A: putative nucleoprotein; crystal structure of the infectious salmon anemia virus nucleoprotein
c4jb9H_ viral protein/immune system Chain: H: antibody vrc06 heavy chain; crystal structure of antibody vrc06 in complex with hiv-1 gp120 core
c2m55B_ calcium binding protein/protein fibril Chain: B: alpha-synuclein; nmr structure of the complex of an n-terminally acetylated alpha-2 synuclein peptide with calmodulin
c4jwtA_ hydrolase Chain: A: methylthioadenosine nucleosidase; crystal structure of a putative 5'-methylthioadenosine/s-2 adenosylhomocysteine nucleosidase from sulfurimonas denitrificans dsm3 1251 (target nysgrc-029304 )
c4j8sA_ protein binding Chain: A: ccr4-not transcription complex subunit 1; crystal structure of human cnot1 mif4g domain in complex with a ttp2 peptide
c4f1aC_ hormone Chain: C: insulin a chain; human insulin
c4jxqA_ transferase Chain: A: acetyltransferase; crystal structure of a gnat superfamily2 phosphinothricinacetyltransferase (pat) from sinorhizobium meliloti3 1021
c4jvyA_ rna binding protein Chain: A: female germline-specific tumor suppressor gld-1; structure of the star (signal transduction and activation of rna)2 domain of gld-1 bound to rna
c4f0nC_ hormone Chain: C: insulin a chain; human insulin
c4f1gC_ hormone Chain: C: insulin a chain; human insulin
c4f1fA_ hormone Chain: A: insulin a chain; human insulin
c4k1cA_ membrane protein/metal transport Chain: A: vacuolar calcium ion transporter; vcx1 calcium/proton exchanger
c2lsqA_ immune system Chain: A: analog of the fragment 197-221 of beta-1 adrenoreceptor; analog of the fragment 197-221 of beta-1 adrenoreceptor
c2m2jA_ structural genomics, unknown function Chain: A: putative periplasmic protein; solution nmr structure of the n-terminal domain of stm1478 from2 salmonella typhimurium lt2: target str147a of the northeast3 structural genomics consortium (nesg), and apc101565 of the midwest4 center for structural genomics (mcsg).
c2ltkA_ oxidoreductase Chain: A: mono-cysteine glutaredoxin; solution structure of a monomeric truncated mutant of trypanosoma2 brucei 1-c-grx1


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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