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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 May 04

Fold library idPDB HeaderMoleculeTitle
c4e70A_ transferase Chain: A: coniferyl alcohol 9-o-methyltransferase; crystal structure analysis of coniferyl alcohol 9-o-methyltransferase2 from linum nodiflorum in complex with coniferyl alcohol
c4ic6A_ hydrolase Chain: A: protease do-like 8, chloroplastic; crystal structure of deg8
c4hpmB_ transcription Chain: B: polycomb group ring finger protein 1; pcgf1 ub fold (rawul)/bcorl1 pufd complex
c4bfiA_ immune system Chain: A: cell surface glycoprotein cd200 receptor 1; structure of the complex of the extracellular portions of mouse2 cd200r and mouse cd200
c4jhmC_ isomerase Chain: C: mandelate racemase / muconate lactonizing enzyme, c- crystal structure of a putative mandelate racemase/muconate2 lactonizing enzyme from pseudovibrio sp.
c4jxjA_ transferase Chain: A: ribosomal rna small subunit methyltransferase a; crystal structure of ribosomal rna small subunit methyltransferase a2 from rickettsia bellii determined by iodide sad phasing
c3j3aL_ ribosome Chain: L: 40s ribosomal protein s11; structure of the human 40s ribosomal proteins
c3j3bF_ ribosome Chain: F: 60s ribosomal protein l7; structure of the human 60s ribosomal proteins
c4h02B_ ligase Chain: B: lysyl-trna synthetase; crystal structure of p. falciparum lysyl-trna synthetase
c3j3be_ ribosome Chain: E: 60s ribosomal protein l6; structure of the human 60s ribosomal proteins
c3j39S_ ribosome Chain: S: 60s ribosomal protein l18a; structure of the d. melanogaster 60s ribosomal proteins
c4ioxB_ viral protein Chain: B: tripartite terminase subunit ul15; the structure of the herpes simplex virus dna-packaging motor pul15 c-2 terminal nuclease domain provides insights into cleavage of3 concatemeric viral genome precursors
c3j39M_ ribosome Chain: M: 60s ribosomal protein l14; structure of the d. melanogaster 60s ribosomal proteins
c3vzdB_ transferase/inhibitor Chain: B: sphingosine kinase 1; crystal structure of sphingosine kinase 1 with inhibitor and adp
c4kamC_ transferase Chain: C: o-acetylhomoserine sulfhydrylase metc; x-ray crystal structure of o-acetylhomoserine sulfhydrylase metc from2 mycobacterium marinum atcc baa-535 / m
c3j39z_ ribosome Chain: Z: 60s ribosomal protein l27; structure of the d. melanogaster 60s ribosomal proteins
c4iutB_ gene regulation Chain: B: sawadee homeodomain homolog 1; crystal structure of shh1 sawadee domain in complex with h3k9me22 peptide
c3j38P_ ribosome Chain: P: 40s ribosomal protein s15, isoform a; structure of the d. melanogaster 40s ribosomal proteins
c4jztA_ hydrolase Chain: A: dgtp pyrophosphohydrolase; crystal structure of the bacillus subtilis pyrophosphohydrolase bsrpph2 (e68a mutant) bound to gtp
c4i7aD_ structural protein Chain: D: ethanolamine utilization protein eutn/carboxysome grpn pentameric microcompartment shell protein from rhodospirillum2 rubrum
c2ympB_ hydrolase Chain: B: l-haloacid dehalogenase; chloroacetic acid complex bound l-haloacid dehalogenase2 from a rhodobacteraceae family bacterium
c4i58A_ oxidoreductase Chain: A: cyclohexylamine oxidase; cyclohexylamine oxidase from brevibacterium oxydans ih-35a
c3j3aZ_ ribosome Chain: Z: 40s ribosomal protein s25; structure of the human 40s ribosomal proteins
c4jj9A_ isomerase Chain: A: 5-carboxymethyl-2-hydroxymuconate delta-isomerase; crystal structure of 5-carboxymethyl-2-hydroxymuconate delta-isomerase
c4hmcA_ hydrolase Chain: A: chitinase 60; crystal structure of cold-adapted chitinase from moritella marina
c2lutA_ hormone Chain: A: midkine-related growth factor; nmr solution structure of midkine-a
c3j3aK_ ribosome Chain: K: 40s ribosomal protein s10; structure of the human 40s ribosomal proteins
c4idhA_ viral protein Chain: A: gene 2 protein; crystal structure of the large terminase subunit gp2 of bacterial2 virus sf6
c3j39m_ ribosome Chain: M: 60s ribosomal protein l14; structure of the d. melanogaster 60s ribosomal proteins
c3j3bO_ ribosome Chain: O: 60s ribosomal protein l13a; structure of the human 60s ribosomal proteins
c3j39D_ ribosome Chain: D: 60s ribosomal protein l5; structure of the d. melanogaster 60s ribosomal proteins
c4jspA_ transferase Chain: A: serine/threonine-protein kinase mtor; atp
c3j3aM_ ribosome Chain: M: 40s ribosomal protein s12; structure of the human 40s ribosomal proteins
c4ic5B_ hydrolase Chain: B: protease do-like 5, chloroplastic; crystal structure of deg5
c3j3bG_ ribosome Chain: G: 60s ribosomal protein l7a; structure of the human 60s ribosomal proteins
c3j3bd_ ribosome Chain: D: 60s ribosomal protein l5; structure of the human 60s ribosomal proteins
c3j3ah_ ribosome Chain: H: 40s ribosomal protein s7; structure of the human 40s ribosomal proteins
c3j39a_ ribosome Chain: A: 60s ribosomal protein l8; structure of the d. melanogaster 60s ribosomal proteins
c3j3bZ_ ribosome Chain: Z: 60s ribosomal protein l27; structure of the human 60s ribosomal proteins
c4hplA_ transcription Chain: A: bcl-6 corepressor; pcgf1 ub fold (rawul)/bcor pufd complex
c3j3bg_ ribosome Chain: G: 60s ribosomal protein l7a; structure of the human 60s ribosomal proteins
c3j3aT_ ribosome Chain: T: 40s ribosomal protein s19; structure of the human 40s ribosomal proteins
c3j3aY_ ribosome Chain: Y: 40s ribosomal protein s24; structure of the human 40s ribosomal proteins
c3j39g_ ribosome Chain: G: 60s ribosomal protein l7a; structure of the d. melanogaster 60s ribosomal proteins
c3j3bL_ ribosome Chain: L: 60s ribosomal protein l13; structure of the human 60s ribosomal proteins
c3j39B_ ribosome Chain: B: 60s ribosomal protein l3; structure of the d. melanogaster 60s ribosomal proteins
c3j3bT_ ribosome Chain: T: 60s ribosomal protein l21; structure of the human 60s ribosomal proteins
c4bjvA_ ligase Chain: A: methionine--trna ligase, cytoplasmic; crystal structure of the aimp3-mrs n-terminal domain complex
c3j38H_ ribosome Chain: H: 40s ribosomal protein s7; structure of the d. melanogaster 40s ribosomal proteins
c4bfiB_ immune system Chain: B: ox-2 membrane glycoprotein; structure of the complex of the extracellular portions of mouse2 cd200r and mouse cd200
c3j39G_ ribosome Chain: G: 60s ribosomal protein l7a; structure of the d. melanogaster 60s ribosomal proteins
c4hpmA_ transcription Chain: A: bcl-6 corepressor-like protein 1; pcgf1 ub fold (rawul)/bcorl1 pufd complex
c3j38f_ ribosome Chain: F: 40s ribosomal protein s5a; structure of the d. melanogaster 40s ribosomal proteins
c3j39f_ ribosome Chain: F: 60s ribosomal protein l7; structure of the d. melanogaster 60s ribosomal proteins
c3j3bM_ ribosome Chain: M: 60s ribosomal protein l14; structure of the human 60s ribosomal proteins
c3j38V_ ribosome Chain: V: 40s ribosomal protein s21; structure of the d. melanogaster 40s ribosomal proteins
c3j3bb_ ribosome Chain: B: 60s ribosomal protein l3; structure of the human 60s ribosomal proteins
c3j39P_ ribosome Chain: P: 60s ribosomal protein l17; structure of the d. melanogaster 60s ribosomal proteins
c4ehsB_ transferase Chain: B: dna primase; crystal structure of helicobacter pylori dnag primase c terminal2 domain
c3j3bn_ ribosome Chain: N: 60s ribosomal protein l15; structure of the human 60s ribosomal proteins
c3j39X_ ribosome Chain: X: 60s ribosomal protein l23a; structure of the d. melanogaster 60s ribosomal proteins
c4j2hA_ oxidoreductase Chain: A: short chain alcohol dehydrogenase-related dehydrogenase; crystal structure of a putative short-chain alcohol dehydrogenase from2 sinorhizobium meliloti 1021 (target nysgrc-011708)
c3j39W_ ribosome Chain: W: 60s ribosomal protein l24; structure of the d. melanogaster 60s ribosomal proteins
c2lvxA_ hydrolase, sugar binding protein Chain: A: glucosidase 2 subunit beta; mrh domain of the glucosidase ii beta subunit from s. pombe
c4k1nA_ cell adhesion Chain: A: catenin alpha-1; crystal structure of full-length mouse alphae-catenin
c3j39U_ ribosome Chain: U: 60s ribosomal protein l22; structure of the d. melanogaster 60s ribosomal proteins
c3j39H_ ribosome Chain: H: 60s ribosomal protein l9; structure of the d. melanogaster 60s ribosomal proteins
c3j3bf_ ribosome Chain: F: 60s ribosomal protein l7; structure of the human 60s ribosomal proteins
c3j3bU_ ribosome Chain: U: 60s ribosomal protein l22; structure of the human 60s ribosomal proteins
c3j39n_ ribosome Chain: N: 60s ribosomal protein l15; structure of the d. melanogaster 60s ribosomal proteins
c3j38I_ ribosome Chain: I: 40s ribosomal protein s8; structure of the d. melanogaster 40s ribosomal proteins
c3j39h_ ribosome Chain: H: 60s ribosomal protein l9; structure of the d. melanogaster 60s ribosomal proteins
c3j39p_ ribosome Chain: P: 60s ribosomal protein l17; structure of the d. melanogaster 60s ribosomal proteins
c3j38G_ ribosome Chain: G: 40s ribosomal protein s6; structure of the d. melanogaster 40s ribosomal proteins
c2ls6A_ hydrolase Chain: A: hyaluronoglucosaminidase; solution nmr structure of a non-canonical galactose-binding cbm32 from2 clostridium perfringens
c4bjuB_ isomerase Chain: B: n-acetylglucosamine-phosphate mutase; genetic and structural validation of aspergillus fumigatus2 n-acetylphosphoglucosamine mutase as an antifungal target
c3j3bi_ ribosome Chain: I: 60s ribosomal protein l10-like; structure of the human 60s ribosomal proteins
c3j3bD_ ribosome Chain: D: 60s ribosomal protein l5; structure of the human 60s ribosomal proteins
c3j39I_ ribosome Chain: I: 60s ribosomal protein l10; structure of the d. melanogaster 60s ribosomal proteins
c4k4kA_ cell adhesion Chain: A: putative cell adhesion protein; crystal structure of a putative cell adhesion protein (bacuni_00621)2 from bacteroides uniformis atcc 8492 at 1.67 a resolution
c3j38T_ ribosome Chain: T: 40s ribosomal protein s19a; structure of the d. melanogaster 40s ribosomal proteins
c3j39r_ ribosome Chain: R: 60s ribosomal protein l19; structure of the d. melanogaster 60s ribosomal proteins
c3zosA_ transferase Chain: A: epithelial discoidin domain-containing receptor 1; structure of the ddr1 kinase domain in complex with ponatinib
c4gveA_ viral protein Chain: A: nucleoprotein; tacaribe nucleoprotein structure
c4k7gD_ isomerase Chain: D: 3-hydroxyproline dehydratse; crystal structure of a 3-hydroxyproline dehydratse from agrobacterium2 vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered3 active site
c3j3bq_ ribosome Chain: Q: 60s ribosomal protein l18; structure of the human 60s ribosomal proteins
c3j3aB_ ribosome Chain: B: 40s ribosomal protein s3a; structure of the human 40s ribosomal proteins
c4jo6Y_ unknown function Chain: Y: sbp-tag; streptavidin complex with sbp-tag
c4j94A_ hydrolase Chain: A: membrane-anchored mycosin mycp1; crystal structure of mycp1 from the esx-1 type vii secretion system
c3j3bE_ ribosome Chain: E: 60s ribosomal protein l6; structure of the human 60s ribosomal proteins
c3j39i_ ribosome Chain: I: 60s ribosomal protein l10; structure of the d. melanogaster 60s ribosomal proteins
c3j38a_ ribosome Chain: A: 40s ribosomal protein sa; structure of the d. melanogaster 40s ribosomal proteins
c3j39R_ ribosome Chain: R: 60s ribosomal protein l19; structure of the d. melanogaster 60s ribosomal proteins
c3j3bh_ ribosome Chain: H: 60s ribosomal protein l9; structure of the human 60s ribosomal proteins
c2luuA_ hormone Chain: A: midkine-related growth factor mdk2; nmr solution structure of midkine-b, mdkb
c3j3aI_ ribosome Chain: I: 40s ribosomal protein s8; structure of the human 40s ribosomal proteins
c3j3aR_ ribosome Chain: R: 40s ribosomal protein s17; structure of the human 40s ribosomal proteins
c3j39L_ ribosome Chain: L: 60s ribosomal protein l13; structure of the d. melanogaster 60s ribosomal proteins
c3j39E_ ribosome Chain: E: 60s ribosomal protein l6, isoform a; structure of the d. melanogaster 60s ribosomal proteins
c3j39O_ ribosome Chain: O: 60s ribosomal protein l13a; structure of the d. melanogaster 60s ribosomal proteins
c3j3bS_ ribosome Chain: S: 60s ribosomal protein l18a; structure of the human 60s ribosomal proteins
c3j39b_ ribosome Chain: B: 60s ribosomal protein l3; structure of the d. melanogaster 60s ribosomal proteins
c4jspC_ transferase Chain: C: target of rapamycin complex subunit lst8; atp
c3j38h_ ribosome Chain: H: 40s ribosomal protein s7; structure of the d. melanogaster 40s ribosomal proteins
c3j39Q_ ribosome Chain: Q: 60s ribosomal protein l18; structure of the d. melanogaster 60s ribosomal proteins
c3j39K_ ribosome Chain: K: 60s ribosomal protein l12; structure of the d. melanogaster 60s ribosomal proteins
c4jo6Z_ unknown function Chain: Z: sbp-tag; streptavidin complex with sbp-tag
c3j31Q_ virus Chain: Q: a223 penton base; life in the extremes: atomic structure of sulfolobus turreted2 icosahedral virus
c4bjrA_ ligase Chain: A: pup--protein ligase, prokaryotic ubiquitin-like protein crystal structure of the complex between prokaryotic2 ubiquitin-like protein pup and its ligase pafa
c4jfcA_ lyase Chain: A: enoyl-coa hydratase; crystal structure of a enoyl-coa hydratase from polaromonas sp. js666
c3j39Z_ ribosome Chain: Z: 60s ribosomal protein l27; structure of the d. melanogaster 60s ribosomal proteins
c3j38z_ ribosome Chain: Z: 40s ribosomal protein s25; structure of the d. melanogaster 40s ribosomal proteins
c4ie9I_ transferase/transferase inhibitor Chain: I: camp-dependent protein kinase inhibitor alpha; bovine pka c-alpha in complex with 3-pyridylmethyl-5-methyl-1h-2 pyrazole-3-carboxylate
c3j39F_ ribosome Chain: F: 60s ribosomal protein l7; structure of the d. melanogaster 60s ribosomal proteins
c3j39k_ ribosome Chain: K: 60s ribosomal protein l12; structure of the d. melanogaster 60s ribosomal proteins
c3j3bj_ ribosome Chain: J: 60s ribosomal protein l11; structure of the human 60s ribosomal proteins
c3j38M_ ribosome Chain: M: 40s ribosomal protein s12; structure of the d. melanogaster 40s ribosomal proteins
c3j39N_ ribosome Chain: N: 60s ribosomal protein l15; structure of the d. melanogaster 60s ribosomal proteins
c3j3bQ_ ribosome Chain: Q: 60s ribosomal protein l18; structure of the human 60s ribosomal proteins
c3j39C_ ribosome Chain: C: 60s ribosomal protein l4; structure of the d. melanogaster 60s ribosomal proteins
c3j3bC_ ribosome Chain: C: 60s ribosomal protein l4; structure of the human 60s ribosomal proteins
c2lyhA_ dna binding protein Chain: A: fanconi anemia-associated protein of 24 kda; structure of faap24 residues 141-215
c3j3br_ ribosome Chain: R: 60s ribosomal protein l19; structure of the human 60s ribosomal proteins


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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