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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Apr 13

Fold library idPDB HeaderMoleculeTitle
c4is2A_ oxidoreductase Chain: A: bile acid 3-alpha hydroxysteroid dehydrogenase; crystal structure of the apo form of a 3alpha-hydroxysteroid2 dehydrogenase (baia2) associated with secondary bile acid synthesis3 from clostridium scindens vpi12708 at 1.90 a resolution
c3zbiR_ cell adhesion Chain: R: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c4b8hU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of 70s ribosome with both cognate trnas in the e2 and p sites representing an authentic elongation complex
c2yn0A_ transcription Chain: A: transcription factor tau 55 kda subunit; tau55 histidine phosphatase domain
c4jigA_ oxidoreductase Chain: A: dehydrogenase; crystal structure of a putative dehydrogenase from burkholderia2 cenocepacia
c3zbiC_ cell adhesion Chain: C: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3zbiX_ cell adhesion Chain: X: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3zbiI_ cell adhesion Chain: I: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c4j2lD_ transcription regulator Chain: D: protein capicua homolog; crystal structure of axh domain complexed with capicua
c3zn7U_ ribosome Chain: U: 30s ribosomal protein thx; the crystal structure of agmatidine trna-ile2 bound to the2 70s ribosome in the a and p site.
c3w3zA_ protein transport/nuclear protein Chain: A: importin subunit beta-3; crystal structure of kap121p bound to rangtp
c4jyxE_ transferase Chain: E: trans-hexaprenyltranstransferase; crystal structure of polyprenyl synthase patl_3739 (target efi-509195)2 from pseudoalteromonas atlantica, complex with inorganic phosphate3 and an unknown ligand
c4fdfB_ biosynthetic protein Chain: B: molybdenum cofactor biosynthesis protein c 2; structural insights into putative molybdenum cofactor biosynthesis2 protein c (moac2) from mycobacterium tuberculosis h37rv
c3u48A_ hydrolase Chain: A: jmb19063; from soil to structure: a novel dimeric family 3-beta-glucosidase2 isolated from compost using metagenomic analysis
c4j33B_ oxidoreductase Chain: B: kynurenine 3-monooxygenase; crystal structure of kynurenine 3-monooxygenase (kmo-394)
c3vdoB_ dna binding protein/protein binding Chain: B: anti-sigma-k factor rska; structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
c4bgoA_ hydrolase Chain: A: efem m75 peptidase; structural and functional role of the imelysin-like protein2 efem from pseudomonas syringae pv. syringae and3 implications in bacterial iron transport
c3vviF_ transport protein Chain: F: non selective cation channel homologous to trp channel; crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
c4joqA_ transport protein Chain: A: abc ribose transporter, periplasmic solute-binding protein; putative ribose abc transporter, periplasmic solute-binding protein2 from rhodobacter sphaeroides
c4iefG_ hydrolase Chain: G: gingipain r2 pro-domain; complex of porphyromonas gingivalis rgpb pro- and mature domains
c4iv5E_ transferase Chain: E: aspartate carbamoyltransferase, putative; x-ray crystal structure of a putative aspartate carbamoyltransferase2 from trypanosoma cruzi
c4iidB_ hydrolase Chain: B: beta-glucosidase 1; crystal structure of beta-glucosidase 1 from aspergillus aculeatus in2 complex with 1-deoxynojirimycin
c2rsyB_ transferase/signaling protein Chain: B: phosphoprotein associated with glycosphingolipid-enriched solution structure of the sh2 domain of csk in complex with a2 phosphopeptide from cbp
c2yowB_ oxidoreductase Chain: B: rbam17540; bacillus amyloliquefaciens cbm33
c4jqrA_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (baccac_02373) from2 bacteroides caccae atcc 43185 at 2.05 a resolution
c4jc0B_ transferase Chain: B: ribosomal protein s12 methylthiotransferase rimo; crystal structure of thermotoga maritima holo rimo in complex with2 pentasulfide, northeast structural genomics consortium target vr77
c2lrmB_ unknown function Chain: B: uncharacterized protein ymgd; assignment and structure of e coli periplasmic protein ymgd
c3vviG_ transport protein Chain: G: non selective cation channel homologous to trp channel; crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
c4j1jA_ viral protein/dna Chain: A: nucleocapsid; leanyer orthobunyavirus nucleoprotein-ssrna complex
c4gdfF_ hydrolase/dna Chain: F: large t antigen; a crystal structure of sv40 large t antigen
c3zonA_ transferase Chain: A: non-receptor tyrosine-protein kinase tyk2; human tyk2 pseudokinase domain bound to a kinase inhibitor
c2m2fA_ hydrolase regulator Chain: A: disintegrin and metalloproteinase domain-containing protein the membran-proximal domain of adam17
c4fd9B_ structural protein Chain: B: beta/gamma crystallin domain-containing protein 3; crystal structure of the third beta-gamma-crystallin domain of crybg32 (betagamma-crystallin domain-containing protein 3) from mus musculus
c4ir1A_ transferase/dna Chain: A: dna polymerase iv; polymerase-dna complex
c4eieA_ electron transport Chain: A: cytochrome c6; crystal structure of cytochrome c6c from synechococcus sp. pcc 7002
c3vdoA_ dna binding protein/protein binding Chain: A: rna polymerase sigma factor sigk; structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
c3zjyE_ translation Chain: E: importin-13; crystal structure of importin 13 - rangtp - eif1a complex
c3vseA_ transferase Chain: A: putative uncharacterized protein; crystal structure of methyltransferase
c3w1oA_ protein binding Chain: A: putative uncharacterized protein; neisseria dna mimic protein dmp12
c3vviH_ transport protein Chain: H: non selective cation channel homologous to trp channel; crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
c3vviD_ transport protein Chain: D: non selective cation channel homologous to trp channel; crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
c4el1A_ chaperone Chain: A: protein disulfide-isomerase; crystal structure of oxidized hpdi (abb'xa')
c4j6oA_ hydrolase Chain: A: metallophosphoesterase; crystal structure of the phosphatase domain of c. thermocellum2 (bacterial) pnkp
c4hk1A_ cell cycle Chain: A: proliferating cell nuclear antigen; crystal structure of pcna from drosophila melanogaster
c4i2oA_ transcription regulator/dna Chain: A: fixk2 protein; the structure of fixk2 from bradyrhizobium japonicum
c3vviC_ transport protein Chain: C: non selective cation channel homologous to trp channel; crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
c4iv9B_ oxidoreductase Chain: B: tryptophan 2-monooxygenase; structure of the flavoprotein tryptophan-2-monooxygenase
c4juyB_ unknown function Chain: B: e3 ubiquitin-protein ligase rnf31; crystal structure of the pub domain of e3 ubiquitin ligase rnf31
c3vviE_ transport protein Chain: E: non selective cation channel homologous to trp channel; crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
c4iffC_ cell cycle Chain: C: fusion of phage phi29 gp7 protein and cell division protein structural organization of ftsb, a transmembrane protein of the2 bacterial divisome
c3vviB_ transport protein Chain: B: non selective cation channel homologous to trp channel; crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
c3vviA_ transport protein Chain: A: non selective cation channel homologous to trp channel; crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
c2m2kA_ transport protein Chain: A: hasb protein; the structure of hasb ctd


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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