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 Protein Homology/analogY Recognition Engine V 2.0


New fold library entries added 2013 Mar 30

Fold library idPDB HeaderMoleculeTitle
c3tw0D_ cell adhesion Chain: D: cell wall surface anchor family protein; structural analysis of adhesive tip pilin, gbs104 from group b2 streptococcus agalactiae
c4j8bA_ protein transport Chain: A: coatomer alpha subunit; crystal structure of alpha-cop/emp47p complex
c4impB_ transferase Chain: B: polyketide synthase extender modules 3-4; the missing linker: a dimerization motif located within polyketide2 synthase modules
c2m1cA_ hydrolase Chain: A: dhh subfamily 1 protein; haddock structure of gtyybt pas homodimer
c4gh5B_ oxidoreductase Chain: B: short-chain dehydrogenase/reductase sdr; crystal structure of s-2-hydroxypropyl coenzyme m dehydrogenase (s-2 hpcdh)
c4i5sA_ transferase Chain: A: putative histidine kinase covs; vick-like protein; structure and function of sensor histidine kinase
c4baxH_ ligase Chain: H: glutamine synthetase; crystal structure of glutamine synthetase from streptomyces2 coelicolor
c4hoiB_ transport protein Chain: B: potassium voltage-gated channel subfamily h member 1; crystal structure of pas domain from the mouse eag1 potassium channel
c4eacC_ lyase Chain: C: mannonate dehydratase; crystal structure of mannonate dehydratase from escherichia coli2 strain k12
c2m4gA_ viral protein Chain: A: murine norovirus vpg protein; solution structure of the core domain (11-85) of the murine norovirus2 vpg protein
c3uiwB_ oxidoreductase Chain: B: glutaredoxin 2; zebrafish grx2 (apo)
c3txaA_ cell adhesion Chain: A: cell wall surface anchor family protein; structural analysis of adhesive tip pilin, gbs104 from group b2 streptococcus agalactiae
c3vziA_ dna binding protein Chain: A: crispr-associated protein cas5, dvulg subtype; crystal structure of crispr-associated protein
c4ax3A_ oxidoreductase Chain: A: copper-containing nitrite reductase; structure of three-domain heme-cu nitrite reductase from2 ralstonia pickettii at 1.6 a resolution
c4ia6B_ immune system Chain: B: myosin-crossreactive antigen; hydratase from lactobacillus acidophilus in a ligand bound form (la2 lah)
c3vqgA_ peptide binding protein Chain: A: e3 ubiquitin-protein ligase lnx; crystal structure analysis of the pdz domain derived from the tight2 junction regulating protein
c4itqA_ gene regulation, structural protein/dna Chain: A: putative uncharacterized protein sco1480; crystal structure of hypothetical protein sco1480 bound to dna
c3vzhA_ dna binding protein Chain: A: putative uncharacterized protein; crystal structure of crispr-associated protein
c3zlcA_ protein transport Chain: A: er-derived vesicles protein erv41; crystal structure of erv41p
c2m36A_ toxin Chain: A: u2-cyrtautoxin-as1a; solution structure of the insecticidal spider-venom peptide aps iii
c4hp4A_ transport protein Chain: A: eag-like k[+] channel; crystal structure of pas domain from the fruit-fly elk potassium2 channel
c4jg2A_ unknown function Chain: A: phage-related protein; structure of phage-related protein from bacillus cereus atcc 10987
c4b3hA_ oxidoreductase/transferase Chain: A: fatty acid beta-oxidation complex alpha-chain fadb; crystal structure of mycobacterium tuberculosis fatty acid2 beta-oxidation complex
c2m0mB_ protein fibril Chain: B: minor ampullate fibroin 1; structural characterization of minor ampullate spidroin domains and2 their distinct roles in fibroin solubility and fiber formation
c4eatB_ ligase Chain: B: benzoate-coenzyme a ligase; crystal structure of a benzoate coenzyme a ligase
c4ediC_ transport protein Chain: C: ethanolamine utilization protein; disulfide bonded eutl from clostridium perfringens
c3zpgA_ hydrolase Chain: A: ribd; acinetobacter baumannii ribd, form 2
c4g2uA_ immune system Chain: A: ancylostoma-secreted protein-like protein; crystal structure analysis of ostertagia ostertagi asp-1
c2lr7A_ unknown function Chain: A: cathelicidin-py; cathelicidin-py
c4eb0A_ hydrolase Chain: A: lcc; crystal structure of leaf-branch compost bacterial cutinase homolog
c4b50A_ immune system Chain: A: 2h10 llama vhh; crystal structure of the hiv-1 gp41 mper-specific llama vhh 2h10
c4dteA_ hydrolase inhibitor Chain: A: serpin peptidase inhibitor, clade e (nexin, plasminogen crystal structure of zebrafish plasminogen activator inhibitor i
c2m4hA_ viral protein Chain: A: feline calicivirus vpg protein; solution structure of the core domain (10-76) of the feline2 calicivirus vpg protein
c2ymoA_ membrane protein Chain: A: pf12; crystal structure of pf12 tandem 6-cys domains from2 plasmodium falciparum
c4iulB_ translation Chain: B: eukaryotic translation initiation factor 4 gamma 2; mif4g domain of dap5
c2yolA_ hydrolase Chain: A: serine protease subunit ns2b, serine protease ns3; west nile virus ns2b-ns3 protease in complex with 3,4-2 dichlorophenylacetyl-lys-lys-gcma
c4igzA_ protein binding Chain: A: sorbin and sh3 domain-containing protein 2; crystal structure of the sh3 domain of human sorbin and sh3 domain-2 containing protein 2
c2m4lA_ structural genomics, unknown function Chain: A: hypothetical protein; nmr structure of hypothetical protein bt_0846 from bacteroides2 thetaiotaomicron vpi-5482 (np_809759.1)
c4fokA_ protein binding Chain: A: fimx; 1.8 a crystal structure of the fimx eal domain in complex with c-digmp
c4jpdA_ metal binding protein Chain: A: protein cyay; the structure of cyay from burkholderia cenocepacia
c4fxjB_ transferase Chain: B: pyruvate kinase isozymes m1/m2; structure of m2 pyruvate kinase in complex with phenylalanine
c4hkaA_ oxidoreductase Chain: A: tryptophan 2,3-dioxygenase; crystal structure of drosophila melanogaster tryptophan 2,3-2 dioxygenase in complex with heme

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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