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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Mar 16

Fold library idPDB HeaderMoleculeTitle
c2m4yA_ electron transport Chain: A: rubredoxin; rubredoxin type protein from mycobacterium ulcerans
c4hlxD_ dna binding protein Chain: D: k9; the crystal structure of the dna binding domain of virf-1 from the2 oncogenic kshv
c3zjcC_ hydrolase Chain: C: gtpase imap family member 7; crystal structure of gmppnp-bound human gimap7 l100q variant
c4jgjB_ immune system Chain: B: carcinoembryonic antigen-related cell adhesion molecule 15; crystal structure of the ig-like d1 domain from mouse2 carcinoembryogenic antigen-related cell adhesion molecule 153 (ceacam15) [psi-nysgrc-005691]
c4gyvA_ signaling protein Chain: A: ferm, rhogef and pleckstrin domain-containing protein 2; crystal strucure of the dh domain of farp2
c4i15B_ hydrolase Chain: B: class 1 phosphodiesterase pdeb1; crystal structure of tbrpdeb1
c4e2aA_ transferase Chain: A: putative acetyltransferase; crystal structure of the putative acetyltransferase from streptococcus2 mutans
c4j5uB_ transferase Chain: B: serine hydroxymethyltransferase; x-ray crystal structure of a serine hydroxymethyltransferase with2 covalently bound plp from rickettsia rickettsii str. sheila smith
c3zd2B_ immune system Chain: B: complement factor h-related protein 1; the structure of the two n-terminal domains of complement factor h2 related protein 1 shows formation of a novel dimerisation interface
c4j3gD_ transferase Chain: D: gcn5-related n-acetyltransferase; crystal structure of ribosomal-protein-alanine n-acetyltransferase2 from brucella melitensis
c4ithB_ transferase/transferase inhibitor Chain: B: receptor-interacting serine/threonine-protein kinase 1; crystal structure of rip1 kinase in complex with necrostatin-1 analog
c3vvaD_ oxidoreductase/oxidoreductase inhibitor Chain: D: alternative oxidase, mitochondrial; crystal structure of cyanide-insensitive alternative oxidase from2 trypanosoma brucei with ascofuranone derivative
c4e2oA_ hydrolase/hydrolase inhibitor Chain: A: alpha-amylase; crystal structure of alpha-amylase from geobacillus thermoleovorans,2 gta, complexed with acarbose
c2rsiA_ metal binding protein Chain: A: zinc finger protein zfat; solution structures of the dna-binding domains of immune-related zinc-2 finger protein zfat
c3w1zD_ chaperone Chain: D: heat shock protein 16; heat shock protein 16.0 from schizosaccharomyces pombe
c4iqjP_ transferase/dna Chain: P: c-terminal domain of the dna polymerase iii subunit tau; structure of poliiialpha-tauc-dna complex suggests an atomic model of2 the replisome
c4jcuC_ isomerase Chain: C: 5-carboxymethyl-2-hydroxymuconate isomerase; crystal structure of a 5-carboxymethyl-2-hydroxymuconate isomerase2 from deinococcus radiodurans r1
c4hs5B_ metal binding protein Chain: B: protein cyay; frataxin from psychromonas ingrahamii as a model to study stability2 modulation within cyay protein family
c4j8pA_ flavoprotein Chain: A: flavodoxin; crystal structure of a putative flavoprotein (bacuni_04544) from2 bacteroides uniformis atcc 8492 at 1.50 a resolution
c4iarA_ signaling protein, electron transport Chain: A: chimera protein of human 5-hydroxytryptamine receptor 1b crystal structure of the chimeric protein of 5-ht1b-bril in complex2 with ergotamine (psi community target, e. xu)
c4gaxA_ lyase Chain: A: amorpha-4,11-diene synthase; crystal structure of an alpha-bisabolol synthase mutant
c4irtA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bacova_03493) from2 bacteroides ovatus atcc 8483 at 1.74 a resolution
c4hxiA_ protein binding Chain: A: kelch-like protein 3; crystal structure of klhl3/cul3 complex
c4h6yA_ signaling protein Chain: A: ferm, rhogef and pleckstrin domain-containing protein 1; crystal strucure of the dh-ph-ph domain of farp1
c4i2wA_ chaperone/protein binding Chain: A: protein unc-45; crystal structure of the myosin chaperone unc-45 from c.elegans in2 complex with a hsp70 peptide
c3w1zA_ chaperone Chain: A: heat shock protein 16; heat shock protein 16.0 from schizosaccharomyces pombe
c4gzuB_ signaling protein Chain: B: ferm, rhogef and pleckstrin domain-containing protein 2; crystal strucure of the dh-ph-ph domain of farp2
c4jb3A_ hydrolase Chain: A: haloacid dehalogenase-like hydrolase; crystal structure of bt_0970, a had family phosphatase from2 bacteroides thetaiotaomicron vpi-5482, target efi-501083, with bound3 sodium and glycerol, closed lid, ordered loop
c4gk5C_ transferase Chain: C: dna polymerase zeta catalytic subunit; crystal structure of human rev3-rev7-rev1-polkappa complex
c3vfqA_ transferase Chain: A: poly [adp-ribose] polymerase 14; human parp14 (artd8, bal2) - macro domains 1 and 2 in complex with2 adenosine-5-diphosphoribose
c4jcsA_ lyase Chain: A: enoyl-coa hydratase/isomerase; crystal structure of enoyl-coa hydratase/isomerase from cupriavidus2 metallidurans ch34
c2m4eA_ unknown function Chain: A: putative uncharacterized protein; solution nmr structure of vv2_0175 from vibrio vulnificus, nesg target2 vnr1 and csgid target idp91333
c4imyI_ transferase Chain: I: af4/fmr2 family member 4; the aff4 scaffold binds human p-tefb adjacent to hiv tat
c4imyG_ transferase Chain: G: af4/fmr2 family member 4; the aff4 scaffold binds human p-tefb adjacent to hiv tat
c3vrhA_ rna binding protein Chain: A: putative uncharacterized protein ph0300; crystal structure of ph0300
c4i6gA_ transcription Chain: A: cryptochrome-2; a vertebrate cryptochrome with fad
c4jedA_ transferase Chain: A: glutathione s-transferase; crystal structure of glutathione s-transferase mrad2831_1084 (target2 efi-507060) from methylobacterium radiotolerans jcm 2831, complex3 with glutathione sulfonate
c4gk0C_ transferase Chain: C: dna polymerase zeta catalytic subunit; crystal structure of human rev3-rev7-rev1 complex
c4akaA_ immune system Chain: A: il-4-inducing protein; ipse alpha-1, an ige-binding crystallin
c4gk5D_ transferase Chain: D: dna polymerase zeta catalytic subunit; crystal structure of human rev3-rev7-rev1-polkappa complex
c4imyH_ transferase Chain: H: af4/fmr2 family member 4; the aff4 scaffold binds human p-tefb adjacent to hiv tat
c4ib4A_ signaling protein, electron transport Chain: A: chimera protein of human 5-hydroxytryptamine receptor 2b crystal structure of the chimeric protein of 5-ht2b-bril in complex2 with ergotamine
c4e2pA_ oxidoreductase Chain: A: cytochrome p450 107b1 (p450cviib1); crystal structure of a post-tailoring hydroxylase (hmtn) involved in2 the himastatin biosynthesis
c4dt5A_ antifreeze protein Chain: A: antifreeze protein; crystal structure of rhagium inquisitor antifreeze protein
c4j29A_ structural genomics, unknown function Chain: A: engineered protein or258; crystal structure of engineered protein. northeast structural genomics2 consortium target or258.
c2lw3A_ membrane protein Chain: A: putative membrane protein mmps4; solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
c2rsjA_ metal binding protein Chain: A: zinc finger protein zfat; solution structures of the dna-binding domains of immune-related zinc-2 finger protein zfat
c4gk0D_ transferase Chain: D: dna polymerase zeta catalytic subunit; crystal structure of human rev3-rev7-rev1 complex
c4gxbA_ protein transport/cell adhesion Chain: A: sorting nexin-17; structure of the snx17 atypical ferm domain bound to the npxy motif of2 p-selectin
c4i6jB_ transcription Chain: B: f-box/lrr-repeat protein 3; a ubiquitin ligase-substrate complex


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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