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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Mar 09

Fold library idPDB HeaderMoleculeTitle
c4iuyB_ oxidoreductase Chain: B: short chain dehydrogenase/reductase; crystal structure of short-chain dehydrogenase/reductase (apo-form)2 from a. baumannii clinical strain wm99c
c4dzdA_ hydrolase Chain: A: uncharacterized protein ygch; crystal structure of the crispr-associated protein cas6e from2 escherichia coli str. k-12
c4j3zE_ isomerase Chain: E: mandelate racemase/muconate lactonizing enzyme; crystal structure of mandelate racemase/muconate lactonizing enzyme2 from jannaschia sp. ccs1
c3v3kB_ hydrolase Chain: B: putative uncharacterized protein ecs1815; human caspase 9 in complex with bacterial effector protein
c3u49B_ oxidoreductase Chain: B: bacilysin biosynthesis oxidoreductase ywfh; crystal structure of ywfh, nadph dependent reductase involved in2 bacilysin biosynthesis
c4im2A_ transferase/transferase inhibitor Chain: A: serine/threonine-protein kinase tbk1; structure of tank-binding kinase 1
c4in3D_ protein transport Chain: D: protein bch1; crystal structure of the chs5-bch1 exomer cargo adaptor complex
c4il6T_ electron transport Chain: T: photosystem ii reaction center protein t; structure of sr-substituted photosystem ii
c4fs9B_ isomerase Chain: B: broad specificity amino acid racemase; complex structure of a broad specificity amino acid racemase (bar)2 within the reactive intermediate
c3j2mX_ viral protein Chain: X: tail sheath protein gp18; the x-ray structure of the gp15 hexamer and the model of the gp182 protein fitted into the cryo-em reconstruction of the extended t43 tail
c4inwA_ pheromone-binding protein Chain: A: pheromone-binding protein 1; structure of pheromone-binding protein 1 in complex with (11z,13z)-2 hexadecadienal
c4eqvA_ hydrolase Chain: A: invertase 2; structure of saccharomyces cerevisiae invertase
c4e19A_ hydrolase Chain: A: ribonuclease h1; crystal structure of rnase h1 from halophilic archaeon halobacterium2 salinarum nrc-1
c3zfsC_ oxidoreductase Chain: C: f420-reducing hydrogenase, subunit beta; cryo-em structure of the f420-reducing nife-hydrogenase2 from a methanogenic archaeon with bound substrate
c4j07E_ transferase Chain: E: 6,7-dimethyl-8-ribityllumazine synthase; crystal structure of a probable riboflavin synthase, beta chain ribh2 (6,7-dimethyl-8-ribityllumazine synthase, dmrl synthase, lumazine3 synthase) from mycobacterium leprae
c4j8qA_ structural genomics, unknown function Chain: A: putative uncharacterized protein; crystal structure of a hypothetical protein (bf0700) from bacteroides2 fragilis nctc 9343 at 2.50 a resolution
c4il6y_ electron transport Chain: Y: photosystem ii reaction center protein ycf12; structure of sr-substituted photosystem ii
c3vcoA_ oxidoreductase Chain: A: dihydrofolate reductase; schistosoma mansoni dihydrofolate reductase
c3vptA_ transferase Chain: A: glutathione s-transferase sigma; crystal structure of bombyx mori sigma-class glutathione transferase2 in apo form
c4ak2A_ heparin-binding protein Chain: A: bt_4661; structure of bt4661, a suse-like surface located2 polysaccharide binding protein from the bacteroides3 thetaiotaomicron heparin utilisation locus
c3vopC_ viral protein Chain: C: protein a27; structure of vaccinia virus a27
c4dqwB_ oxidoreductase Chain: B: inosine-5'-monophosphate dehydrogenase; crystal structure analysis of pa3770
c4efxC_ hormone Chain: C: insulin; highly biologically active insulin with additional disulfide bond
c4b6hA_ hydrolase/peptide Chain: A: mrna-decapping enzyme 1a; structure of hdcp1a in complex with proline rich sequence of pnrc2
c4il6R_ electron transport Chain: R: photosystem ii protein y; structure of sr-substituted photosystem ii
c4il6Y_ electron transport Chain: Y: photosystem ii reaction center protein ycf12; structure of sr-substituted photosystem ii
c4hqeB_ transcription/dna Chain: B: transcriptional regulator qsrr; the crystal structure of qsrr-dna complex
c4ak1A_ heparin-binding protein Chain: A: bt_4661; structure of bt4661, a suse-like surface located polysaccharide2 binding protein from the bacteroides thetaiotaomicron heparin3 utilisation locus
c4in3C_ protein transport Chain: C: chitin biosynthesis protein chs5; crystal structure of the chs5-bch1 exomer cargo adaptor complex
c4iyjA_ hydrolase Chain: A: gdsl-like protein; crystal structure of a putative acylhydrolase (bacuni_03406) from2 bacteroides uniformis atcc 8492 at 1.37 a resolution
c4ii7D_ hydrolase Chain: D: flai atpase; archaellum assembly atpase flai
c4h4kA_ rna binding protein Chain: A: crispr system cmr subunit cmr3; structure of the cmr2-cmr3 subcomplex of the cmr rna-silencing complex
c4il6l_ electron transport Chain: L: photosystem ii reaction center protein l; structure of sr-substituted photosystem ii
c4jd7D_ isomerase Chain: D: proline racemase; crystal structure of pput_1285, a putative hydroxyproline epimerase2 from pseudomonas putida f1 (target efi-506500), open form, space3 group p212121, bound sulfate
c4h2uC_ ligase Chain: C: aminoacyl carrier protein 1; crystal structure of bradyrhizobium japonicum glycine:[carrier2 protein] ligase complexed with cognate carrier protein and atp
c4efxA_ hormone Chain: A: insulin; highly biologically active insulin with additional disulfide bond
c4il6L_ electron transport Chain: L: photosystem ii reaction center protein l; structure of sr-substituted photosystem ii
c4h2sD_ ligase Chain: D: aminoacyl carrier protein 1; crystal structure of bradyrhizobium japonicum glycine:[carrier2 protein] ligase complexed with cognate carrier protein and amp
c4jccA_ transport protein Chain: A: iron-compound abc transporter, iron-compound-binding crystal structure of iron uptake abc transporter substrate-binding2 protein piua from streptococcus pneumoniae canada mdr_19a
c4iqyB_ hydrolase Chain: B: o-acetyl-adp-ribose deacetylase macrod2; crystal structure of the human protein-proximal adp-ribosyl-hydrolase2 macrod2
c4h1wB_ hydrolase/hydrolase regulator Chain: B: sarcolipin; e1 structure of the (sr) ca2+-atpase in complex with sarcolipin
c4il6t_ electron transport Chain: T: photosystem ii reaction center protein t; structure of sr-substituted photosystem ii
c3zfsB_ oxidoreductase Chain: B: f420-reducing hydrogenase, subunit gamma; cryo-em structure of the f420-reducing nife-hydrogenase2 from a methanogenic archaeon with bound substrate
c4f0zC_ hydrolase/protein binding Chain: C: ankyrin repeat domain-containing protein a238l; crystal structure of calcineurin in complex with the calcineurin-2 inhibiting domain of the african swine fever virus protein a238l
c3j2uK_ motor protein Chain: K: kinesin-like protein klp10a; kinesin-13 klp10a hd in complex with cs-tubulin and a microtubule
c4dzaA_ isomerase Chain: A: lysine racemase; crystal structure of a lysine racemase within internal aldimine2 linkage
c3zo4I_ transferase/inhibitor Chain: I: camp-dependent protein kinase inhibitor alpha; the synthesis and evaluation of diazaspirocyclic protein2 kinase inhibitors
c3zfsA_ oxidoreductase Chain: A: f420-reducing hydrogenase, subunit alpha; cryo-em structure of the f420-reducing nife-hydrogenase2 from a methanogenic archaeon with bound substrate
c4h2tC_ ligase Chain: C: aminoacyl carrier protein 1; crystal structure of bradyrhizobium japonicum glycine:[carrier2 protein] ligase complexed with cognate carrier protein and an3 analogue of glycyl adenylate
c3w5aC_ metal transport/membrane protein Chain: C: sarcolipin; crystal structure of the calcium pump and sarcolipin from rabbit fast2 twitch skeletal muscle in the e1.mg2+ state
c4h2vC_ ligase Chain: C: aminoacyl carrier protein 1; crystal structure of bradyrhizobium japonicum glycine:[carrier2 protein] ligase complexed with glycylated carrier protein


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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