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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Feb 23

Fold library idPDB HeaderMoleculeTitle
c4io7A_ membrane protein Chain: A: avglur1 ligand binding domain; crystal structure of the avglur1 ligand binding domain complex with2 phenylalanine at 1.9 angstrom resolution
c2lv6B_ metal binding protein/transferase Chain: B: myosin light chain kinase 2, skeletal/cardiac muscle; the complex between ca-calmodulin and skeletal muscle myosin light2 chain kinase from combination of nmr and aqueous and contrast-matched3 saxs data
c4ewtC_ hydrolase Chain: C: peptidase, m20/m25/m40 family; the crystal structure of a putative aminohydrolase from methicillin2 resistant staphylococcus aureus
c3zmdD_ transcription Chain: D: putative transcriptional regulator; crystal structure of absc, a marr family transcriptional2 regulator from streptomyces coelicolor
c4ixqy_ photosynthesis Chain: Y: photosystem ii reaction center protein y; rt fs x-ray diffraction of photosystem ii, dark state
c3zc4G_ immune system Chain: G: sso1398; the structure of csa5 from sulfolobus solfataricus.
c4ggfT_ antimicrobial protein Chain: T: protein s100-a9; crystal structure of mn2+ bound calprotectin
c4h44E_ photosynthesis Chain: E: cytochrome b6-f complex subunit 6; 2.70 a cytochrome b6f complex structure from nostoc pcc 7120
c4ixrt_ photosynthesis Chain: T: photosystem ii reaction center protein t; rt fs x-ray diffraction of photosystem ii, first illuminated state
c4hhsA_ oxidoreductase Chain: A: alpha-dioxygenase; crystal structure of fatty acid alpha-dioxygenase (arabidopsis2 thaliana)
c4hg0A_ transport protein Chain: A: magnesium and cobalt efflux protein corc; crystal structure of magnesium and cobalt efflux protein corc,2 northeast structural genomics consortium (nesg) target er40
c4gafA_ signaling protein Chain: A: ebi-005; crystal structure of ebi-005, a chimera of human il-1beta and il-1ra,2 bound to human interleukin-1 receptor type 1
c4j5iH_ oxidoreductase Chain: H: alpha-ketoglutarate-dependent taurine dioxygenase; crystal structure of an alpha-ketoglutarate-dependent taurine2 dioxygenase from mycobacterium smegmatis
c4ixrL_ photosynthesis Chain: L: photosystem ii reaction center protein l; rt fs x-ray diffraction of photosystem ii, first illuminated state
c3w0kA_ hydrolase Chain: A: bifunctional endomannanase/endoglucanase; crystal structure of a glycoside hydrolase
c3zn3A_ cell cycle Chain: A: anaphase-promoting complex subunit 8; n-terminal domain of s. pombe cdc23 apc subunit
c4b88A_ hydrolase Chain: A: beta-lactamase; ancestral (gnca) beta-lactamase class a
c4iscA_ transferase Chain: A: methyltransferase; crystal structure of a putative methyltransferase from pseudomonas2 syringae
c4eoyB_ transport protein Chain: B: microtubule-associated protein 1 light chain 3; plasmodium falciparum atg8 in complex with plasmodium falciparum atg32 peptide
c4ipbA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bacova_02504) from2 bacteroides ovatus atcc 8483 at 1.62 a resolution
c4eukA_ signaling protein Chain: A: histidine kinase 5; crystal structure
c4fl0A_ transferase Chain: A: aminotransferase ald1; crystal structure of ald1 from arabidopsis thaliana
c4il3B_ hydrolase Chain: B: ste24p; crystal structure of s. mikatae ste24p
c4ixqL_ photosynthesis Chain: L: photosystem ii reaction center protein l; rt fs x-ray diffraction of photosystem ii, dark state
c4ifqA_ protein transport Chain: A: nucleoporin nup192; crystal structure of saccharomyces cerevisiae nup192, residues 2 to2 960 [scnup192(2-960)]
c4iykA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bacuni_04699) from2 bacteroides uniformis atcc 8492 at 2.00 a resolution
c4ixrg_ photosynthesis Chain: G: photosystem ii reaction center protein y; rt fs x-ray diffraction of photosystem ii, first illuminated state
c4glfA_ transferase Chain: A: rsfp; crystal structure of methylthioadenosine phosphorylase sourced from an2 antarctic soil metagenomic library
c2m2eA_ transcription regulator Chain: A: dnaj homolog subfamily c member 2; solution nmr structure of the sant domain of human dnajc2, northeast2 structural genomics consortium target hr8254a
c4fmoB_ hydrolase Chain: B: dna mismatch repair protein pms1; structure of the c-terminal domain of the saccharomyces cerevisiae2 mutl alpha (mlh1/pms1) heterodimer bound to a fragment of exo1
c4iagA_ zorbamycin binding protein Chain: A: zbm binding protein; crystal structure of zbma, the zorbamycin binding protein from2 streptomyces flavoviridis
c4ioyX_ transcription Chain: X: fact complex subunit spt16; structure of the spt16 middle domain reveals functional features of2 the histone chaperone fact
c4j3cB_ transferase Chain: B: ribosomal rna small subunit methyltransferase e; crystal structure of 16s ribosomal rna methyltransferase rsme
c3zikA_ cell cycle Chain: A: wpl1; structure of the wpl1 protein
c4i3gB_ hydrolase Chain: B: beta-glucosidase; crystal structure of desr, a beta-glucosidase from streptomyces2 venezueale in complex with d-glucose.
c4fmoA_ hydrolase Chain: A: dna mismatch repair protein mlh1; structure of the c-terminal domain of the saccharomyces cerevisiae2 mutl alpha (mlh1/pms1) heterodimer bound to a fragment of exo1
c4g5tX_ ribosome/antibiotic Chain: X: 30s ribosomal protein thx; crystal structure of the 70s ribosome with tigecycline. this entry2 contains the 30s subunit of molecule a.
c3zmfC_ membrane protein Chain: C: general control protein gcn4, putative inner membrane salmonella enterica sada 303-358 fused to gcn4 adaptors (sadak2)
c4ixqt_ photosynthesis Chain: T: photosystem ii reaction center protein t; rt fs x-ray diffraction of photosystem ii, dark state
c4g5mX_ ribosome/antibiotic Chain: X: 30s ribosomal protein thx; crystal structure of the 70s ribosome with tetracycline. this entry2 contains the 30s subunit of molecule b.
c4ixqg_ photosynthesis Chain: G: photosystem ii reaction center protein y; rt fs x-ray diffraction of photosystem ii, dark state
c4h44F_ photosynthesis Chain: F: cytochrome b6-f complex subunit 7; 2.70 a cytochrome b6f complex structure from nostoc pcc 7120
c4ixqT_ photosynthesis Chain: T: photosystem ii reaction center protein t; rt fs x-ray diffraction of photosystem ii, dark state
c4ixrT_ photosynthesis Chain: T: photosystem ii reaction center protein t; rt fs x-ray diffraction of photosystem ii, first illuminated state
c4ixrl_ photosynthesis Chain: L: photosystem ii reaction center protein l; rt fs x-ray diffraction of photosystem ii, first illuminated state
c2m20B_ signaling protein Chain: B: epidermal growth factor receptor; egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
c4j0nA_ hydrolase Chain: A: isatin hydrolase b; crystal structure of a manganese dependent isatin hydrolase
c4g5kX_ ribosome/antibiotic Chain: X: 30s ribosomal protein thx; crystal structure of the 70s ribosome with tetracycline. this entry2 contains the 30s subunit of molecule a.
c4j2uA_ lyase Chain: A: enoyl-coa hydratase; crystal structure of an enoyl-coa hydratase from rhodobacter2 sphaeroides 2.4.1
c4iknA_ protein transport Chain: A: ap-3 complex subunit mu-1; crystal structure of adaptor protein complex 3 (ap-3) mu3a subunit c-2 terminal domain, in complex with a sorting peptide from tgn38
c3vocA_ hydrolase Chain: A: beta/alpha-amylase; crystal structure of the catalytic domain of beta-amylase from2 paenibacillus polymyxa
c4g5vX_ ribosome/antibiotic Chain: X: 30s ribosomal protein thx; crystal structure of the 70s ribosome with tigecycline. this entry2 contains the 30s subunit of molecule b.
c4ixry_ photosynthesis Chain: Y: photosystem ii reaction center protein y; rt fs x-ray diffraction of photosystem ii, first illuminated state
c4h44H_ photosynthesis Chain: H: cytochrome b6-f complex subunit 8; 2.70 a cytochrome b6f complex structure from nostoc pcc 7120
c4ixql_ photosynthesis Chain: L: photosystem ii reaction center protein l; rt fs x-ray diffraction of photosystem ii, dark state


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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