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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Feb 01

Fold library idPDB HeaderMoleculeTitle
c4hotA_ rna binding protein/rna Chain: A: interferon-induced protein with tetratricopeptide repeats crystal structure of full-length human ifit5 with 5`-triphosphate2 oligoadenine
c4indR_ viral protein Chain: R: c381 turret protein; the triple jelly roll fold and turret assembly in an archaeal virus
c4f7oB_ hydrolase Chain: B: cop9 signalosome complex subunit 5; crystal structure of csn5
c2m0rA_ metal binding protein Chain: A: protein s100-a14; solution structure and dynamics of human s100a14
c3zc1E_ hydrolase Chain: E: aftrax; crystal structure of afc3po
c3zijA_ oxidoreductase Chain: A: thioredoxin; crystal structure of the thioredoxin-like protein bc3987
c2lrsA_ hydrolase Chain: A: endoribonuclease dicer homolog 1; the second dsrbd domain from a. thaliana dicer-like 1
c4aipB_ transport protein Chain: B: fe-regulated protein b; the frpb iron transporter from neisseria meningitidis (f3-3 variant)
c4fgvA_ transport protein Chain: A: chromosome region maintenance 1 (crm1) or exportin 1 crystal structure of free crm1 (crystal form 1)
c3vfiA_ electron transport Chain: A: thioredoxin; crystal structure of a metagenomic thioredoxin
c3tz1A_ contractile protein Chain: A: troponin c; crystal structure of the ca2+-saturated c-terminal domain of akazara2 scallop troponin c in complex with a troponin i fragment
c3vnqA_ ligase Chain: A: nrps adenylation protein cytc1; co-crystal structure of nrps adenylation protein cytc1 with atp from2 streptomyces
c4iq1A_ transferase Chain: A: glutathione transferase; crystal structure of glutathione s-transferase mha_0454 (target efi-2 507015) from mannheimia haemolytica, substrate-free
c4b6cB_ isomerase Chain: B: dna gyrase subunit b; structure of the m. smegmatis gyrb atpase domain in complex2 with an aminopyrazinamide
c4imaD_ transferase Chain: D: pyruvate kinase; the structure of c436m-hlpyk in complex with citrate/mn/atp/fru-1,6-bp
c2m34A_ transcription Chain: A: homeobox protein gbx-1; nmr structure of the homeodomain transcription factor gbx1 from homo2 sapiens
c4ah7C_ lyase Chain: C: n-acetylneuraminate lyase; structure of wild type stapylococcus aureus n-acetylneuraminic acid2 lyase in complex with pyruvate
c4hnjC_ apoptosis/protein binding Chain: C: bcl-2-binding component 3; crystallographic structure of bcl-xl domain-swapped dimer in complex2 with puma bh3 peptide at 2.9a resolution
c2lq8A_ transcription Chain: A: transcription antitermination protein nusg; domain interaction in thermotoga maritima nusg
c2m38A_ peptide binding protein Chain: A: ankyrin repeat and sterile alpha motif domain-containing ptb domain of aida1
c4aifA_ signaling protein/peptide Chain: A: ah receptor-interacting protein; aip tpr domain in complex with human hsp90 peptide
c4gkfA_ unknown function Chain: A: crispr system cmr subunit cmr5; crystal structure and characterization of cmr5 protein from pyrococcus2 furiosus
c4g94B_ dna binding protein Chain: B: orf067; g1 orf67 / staphyloccus aureus sigmaa domain 4 complex
c3vu0B_ transferase Chain: B: putative uncharacterized protein; crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (afaglb-s2, af_0040, o30195_arcfu) from3 archaeoglobus fulgidus
c3vu1A_ transferase Chain: A: putative uncharacterized protein ph0242; crystal structure of the c-terminal globular domain of2 oligosaccharyltransferase (phaglb-l, o74088_pyrho) from pyrococcus3 horikoshii
c4arnD_ immune system Chain: D: toll receptor, variable lymphocyte receptor b.61 chimera; crystal structure of the n-terminal domain of drosophila toll2 receptor
c2lo4A_ protein transport Chain: A: optineurin; nmr solution structure of optineurin zinc-finger domain
c4i43A_ splicing Chain: A: a1 cistron-splicing factor aar2; crystal structure of prp8:aar2 complex
c4i5iA_ hydrolase Chain: A: nad-dependent protein deacetylase sirtuin-1; crystal structure of the sirt1 catalytic domain bound to nad and an2 ex527 analog
c4gizC_ viral protein Chain: C: protein e6; crystal structure of full-length human papillomavirus oncoprotein e62 in complex with lxxll peptide of ubiquitin ligase e6ap at 2.55 a3 resolution
c4im7A_ oxidoreductase Chain: A: hypothetical oxidoreductase ydfi; crystal structure of fructuronate reductase (ydfi) from e. coli cft0732 (efi target efi-506389) complexed with nadh and d-mannonate
c4df1B_ lyase/lyase inhibitor Chain: B: orotidine 5'-phosphate decarboxylase; crystal structure of orotidine 5'-monophosphate decarboxylase from2 thermoproteus neutrophilus complexed with inhibitor bmp
c2lo9A_ toxin Chain: A: mu-conotoxin buiiib; nmr solution structure of mu-contoxin buiiib
c4i43B_ splicing Chain: B: pre-mrna-splicing factor 8; crystal structure of prp8:aar2 complex
c2lvsA_ dna binding protein Chain: A: putative uncharacterized protein; nmr solution structure of a crispr repeat binding protein
c3tz1B_ contractile protein Chain: B: troponin i; crystal structure of the ca2+-saturated c-terminal domain of akazara2 scallop troponin c in complex with a troponin i fragment
c2locA_ toxin Chain: A: mu-conotoxin buiiib; conotoxin analogue [d-ala2]buiiib
c2m0aA_ hydrolase Chain: A: non-structural protein 3; solution structure of mhv nsp3a
c3w06A_ hydrolase Chain: A: hydrolase, alpha/beta fold family protein; crystal structure of arabidopsis thaliana dwarf14 like (atd14l)


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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