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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Jan 22

Fold library idPDB HeaderMoleculeTitle
c3usaG_ immune system Chain: G: hla class ii histocompatibility antigen, do alpha chain; mhc class ii homolog structure
c4i78A_ viral protein Chain: A: hemagglutinin ha1; crystal structure of a subtype h17 hemagglutinin homologue from2 a/little yellow-shouldered bat/guatemala/060/2010 (h17n10)
c4b3yB_ transferase Chain: B: fatty acid synthase; cryo-em structure of the mycobacterial fatty acid synthase
c4hj1A_ viral protein Chain: A: envelope glycoprotein; crystal structure of glycoprotein c from rift valley fever virus2 (glycosylated)
c4hfkC_ hydrolase Chain: C: putative cytoplasmic protein; crystal structure of the type vi effector-immunity complex tae4-tai42 from enterobacter cloacae
c3vr5C_ hydrolase Chain: C: v-type sodium atpase catalytic subunit a; crystal structure of nucleotide-free enterococcus hirae v1-atpase2 [ev1(l)]
c4i1oD_ protein transport/hydrolase Chain: D: lepb; crystal structure of the legionella pneumophila gap domain of lepb in2 complex with rab1b bound to gdp and bef3
c4hlqE_ hydrolase activator/protein transport Chain: E: tbc1 domain family member 20; crystal structure of human rab1b bound to gdp and bef3 in complex with2 the gap domain of tbc1d20 from homo sapiens
c4e75A_ transferase Chain: A: udp-3-o-acylglucosamine n-acyltransferase; structure of lpxd from acinetobacter baumannii at 2.85a resolution2 (p21 form)
c4iogD_ unknown function Chain: D: secreted protein esxb; the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
c3vsjA_ oxidoreductase Chain: A: 2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit; crystal structure of 1,6-apd (2-animophenol-1,6-dioxygenase) complexed2 with intermediate products
c4hj6A_ signaling protein Chain: A: lov protein; crystal structure of rhodobacter sphaeroides lov protein
c4hffA_ hydrolase Chain: A: putative cytoplasmic protein; crystal structure of the type vi effector-immunity complex tae4-tai42 from salmonella typhimurium
c4i83A_ lyase Chain: A: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase fabz; crystal structure of (3r)-hydroxymyristoyl-acp dehydratase from2 neisseria meningitidis fam18
c2yq2A_ viral protein Chain: A: bvdv1 e2; structure of bvdv1 envelope glycoprotein e2, ph8
c4gutA_ oxidoreductase Chain: A: lysine-specific histone demethylase 1b; crystal structure of lsd2-npac
c4damA_ dna binding protein Chain: A: single-stranded dna-binding protein 1; crystal structure of small single-stranded dna-binding protein from2 streptomyces coelicolor
c4hffB_ hydrolase Chain: B: putative periplasmic protein; crystal structure of the type vi effector-immunity complex tae4-tai42 from salmonella typhimurium
c3vndD_ lyase Chain: D: tryptophan synthase alpha chain; crystal structure of tryptophan synthase alpha-subunit from the2 psychrophile shewanella frigidimarina k14-2
c4i0xJ_ structural genomics, unknown function Chain: J: esat-6-like protein mab_3113; crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
c4babC_ lyase Chain: C: phenylalanine aminomutase; redesign of a phenylalanine aminomutase into a beta-phenylalanine2 ammonia lyase
c4ic1D_ structural genomics, unknown function Chain: D: uncharacterized protein; crystal structure of sso0001
c2lquA_ cell adhesion Chain: A: decorin-binding protein a; structure of decorbin-binding protein a from borrelia burgdorferi
c4djmA_ chaperone Chain: A: drab; crystal structure of the e. coli chaperone drab
c4ib2B_ transport protein Chain: B: putative lipoprotein; crystal structure of a putative lipoprotein (rumgna_00858) from2 ruminococcus gnavus atcc 29149 at 1.76 a resolution
c4g9gA_ hydrolase Chain: A: alpha/beta hydrolase fold protein; crystal structures of n-acyl homoserine lactonase aidh e219g mutant
c4e40A_ transport protein Chain: A: putative uncharacterized protein; the haptoglobin-hemoglobin receptor of trypanosoma congolense
c4ga7A_ hydrolase inhibitor Chain: A: leukocyte elastase inhibitor; crystal structure of human serpinb1 mutant
c4inaA_ oxidoreductase Chain: A: saccharopine dehydrogenase; crystal structure of the q7mss8_wolsu protein from wolinella2 succinogenes. northeast structural genomics consortium target wsr35
c4i0xA_ structural genomics, unknown function Chain: A: esat-6-like protein mab_3112; crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
c4addD_ transferase Chain: D: succinylornithine transaminase; structural and functional study of succinyl-ornithine2 transaminase from e. coli
c2m2bA_ rna binding protein Chain: A: rna-binding protein 10; nmr structure of the rrm2 domain of the protein rbm10 from homo2 sapiens
c3vr5D_ hydrolase Chain: D: v-type sodium atpase subunit b; crystal structure of nucleotide-free enterococcus hirae v1-atpase2 [ev1(l)]
c4gurC_ oxidoreductase Chain: C: histone h3.3; crystal structure of lsd2-npac with h3 in space group p21
c4infA_ hydrolase Chain: A: metal-dependent hydrolase; crystal structure of amidohydrolase saro_0799 (target efi-505250) from2 novosphingobium aromaticivorans dsm 12444 with bound calcium
c4hfkB_ hydrolase Chain: B: putative uncharacterized protein; crystal structure of the type vi effector-immunity complex tae4-tai42 from enterobacter cloacae
c4fofA_ signaling protein Chain: A: methyl-accepting chemotaxis protein; crystal structure of the blue-light absorbing form of the2 thermosynechococcus elongatus pixj gaf-domain
c4il0G_ lyase Chain: G: glucarate dehydratase-related protein; crystal structure of glucdrp from e. coli k-12 mg1655 (efi target efi-2 506058)
c3vsjB_ oxidoreductase Chain: B: 2-amino-5-chlorophenol 1,6-dioxygenase beta subunit; crystal structure of 1,6-apd (2-animophenol-1,6-dioxygenase) complexed2 with intermediate products
c2lowA_ membrane protein Chain: A: apelin receptor; solution structure of ar55 in 50% hfip
c3vxvA_ hydrolase/dna Chain: A: methyl-cpg-binding domain protein 4; crystal structure of methyl cpg binding domain of mbd4 in complex with2 the 5mcg/tg sequence
c4gqvA_ protein binding Chain: A: cbs domain-containing protein cbsx1, chloroplastic; crystal structure of cbs-pair protein, cbsx1 from arabidopsis thaliana
c4fxwB_ protein binding Chain: B: splicing factor 1; structure of phosphorylated sf1 complex with u2af65-uhm domain
c3tlkB_ metal transport Chain: B: ferrienterobactin-binding periplasmic protein; crystal structure of holo fepb
c4i82A_ hydrolase Chain: A: putative uncharacterized protein; crystal structure of hypothetical thioesterase protein sp_1851 from2 streptococcus pneumoniae tigr4
c3vd8A_ sugar binding protein,signaling protein Chain: A: maltose-binding periplasmic protein, interferon-inducible crystal structure of human aim2 pyd domain with mbp fusion
c4ikhA_ transferase Chain: A: glutathione s-transferase; crystal structure of a glutathione transferase family member from2 psuedomonas fluorescens pf-5, target efi-900003, with two glutathione3 bound
c4ienB_ hydrolase Chain: B: putative acyl-coa hydrolase; crystal structure of acyl-coa hydrolase from neisseria meningitidis2 fam18
c4gq7A_ sugar binding protein Chain: A: flocculin; crystal structure of lg-flo1p
c4ijnB_ transferase Chain: B: acetate kinase; crystal structure of an acetate kinase from mycobacterium smegmatis2 bound to amp and sulfate
c4fuoA_ membrane protein Chain: A: accumulation associated protein; structural basis for zn2+-dependent intercellular adhesion in2 staphylococcal biofilms
c4dr9C_ hydrolase/hydrolase inhibitor Chain: C: peptide deformylase; crystal structure of a peptide deformylase from synechococcus2 elongatus in complex with actinonin
c4ex7A_ hydrolase Chain: A: alnb; crystal structure of the alnumycin p phosphatase in complex with free2 phosphate
c3zgwA_ transferase Chain: A: maternal embryonic leucine zipper kinase; crystal structure of maternal embryonic leucine zipper2 kinase (melk) in complex with amp-pnp
c4ex8A_ ligase Chain: A: alna; crystal structure of the prealnumycin c-glycosynthase alna
c3zi1A_ isomerase Chain: A: glyoxalase domain-containing protein 4; crystal structure of human glyoxalase domain-containing2 protein 4 (glod4)
c4ak9A_ protein transport Chain: A: cpftsy; structure of chloroplast ftsy from physcomitrella patens
c4iiwB_ structural genomics, unknown function Chain: B: lmo1499 protein; 2.6 angstrom crystal structure of putative yceg-like protein lmo14992 from listeria monocytogenes
c4dbeB_ lyase/lyase inhibitor Chain: B: orotidine 5'-phosphate decarboxylase; crystal structure of orotidine 5'-monophosphate decarboxylase from2 sulfolobus solfataricus complexed with inhibitor bmp
c4i21D_ transferase/transferase inhibitor Chain: D: erbb receptor feedback inhibitor 1; crystal structure of l858r + t790m egfr kinase domain in complex with2 mig6 peptide
c4b2uA_ toxin Chain: A: s67; s67, a spider venom toxin peptide from sicarius dolichocephalus
c4hnvB_ ligase Chain: B: pyruvate carboxylase; crystal structure of r54e mutant of s. aureus pyruvate carboxylase
c4imrA_ oxidoreductase Chain: A: 3-oxoacyl-(acyl-carrier-protein) reductase; crystal structure of 3-oxoacyl (acyl-carrier-protein) reductase2 (target efi-506442) from agrobacterium tumefaciens c58 with nadp3 bound
c4b2vA_ toxin Chain: A: s64; s64, a spider venom toxin peptide from sicarius dolichocephalus
c4i8iA_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (bacuni_01406) from2 bacteroides uniformis atcc 8492 at 1.50 a resolution
c3w0fA_ hydrolase Chain: A: endonuclease 8-like 3; crystal structure of mouse endonuclease viii-like 3 (mneil3)
c2lyiA_ structural protein Chain: A: protein (entity); repetitive domain (rp) of aciniform spidroin 1 from nephila2 antipodiana
c3zdkA_ hydrolase Chain: A: 5' exonuclease apollo; crystal structure of human 5' exonuclease apollo
c4glkA_ hydrolase Chain: A: abiq; structure and activity of abiq, a lactococcal anti-phage2 endoribonuclease belonging to the type-iii toxin-antitoxin system
c2m0oA_ peptide binding protein Chain: A: phd finger protein 1; the solution structure of human phf1 in complex with h3k36me3
c4b4sA_ apoptosis Chain: A: bcl-2-like protein 10; crystal structure of a pro-survival bcl-2:bim bh3 complex
c4i21C_ transferase/transferase inhibitor Chain: C: erbb receptor feedback inhibitor 1; crystal structure of l858r + t790m egfr kinase domain in complex with2 mig6 peptide
c4gusC_ oxidoreductase Chain: C: histone h3.3; crystal structure of lsd2-npac with h3 in space group p3221


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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