Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c8e93B_

Fold library idPDB HeaderMoleculeTitle
c8e93B_3.71PDB header: transport proteinChain: B: PDB Molecule: glutamate receptor ionotropic, nmda 2c;


Added to library: Sat Dec 10 09:30:25 2022
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TVAVVFSSSGPPQAQFRARLTPQSFLDLPLEIQPLTVGVNTTNPSSLLTQICGLLGAAHVHGIVFEDNVD
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)



S

TTS
TT


SSS



SS

TSTT





TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence TEAVAQILDFISSQTHVPILSISGGSAVVLTPKEPGSAFLQLGVSLEQQLQVLFKVLEEYDWSAFAVITS
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)

T



SSGGGS

SS

TT





S

TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence LHPGHALFLEGVRAVADASHVSWRLLDVVTLELGPGGPRARTQRLLRQLDAPVFVAYCSREEAEVLFAEA
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) S
TTTTSSSS




SSSS
S


S

 .........220.........230.........240.........250.........260.........270.........280
Sequence AQAGLVGPGHVWLVPNLALGSTDAPPATFPVGLISVVTESWRLSLRQKVRDGVAILALGAHSYWRQHGTL
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) TT

STT


TTSS
SSS


TT

TT

GGGS

T
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence PAPAGDCRVHPGPVSPAREAFYRHLLNVTWEGRDFSFSPGGYLVQPTMVVIALNRHRLWEMVGRWEHGVL
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP)





SSSS

S

SSTT

TT

B
TTSSBSS



TTSSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence YMKYPVWPRYSASLQPVVDSRHLTVATLEERPFVIVESPDPGTGGCVPNTVPCRRQSAPYTKLCCKGFCI
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP)

S
SS

B

TTS

B

TT




BTTTB


TTTSS

SS









S
 .........430.........440.........450.........460.........470.........480.........490
Sequence DILKKLARVVKFSYDLYLVTNGKHGKRVRGVWNGMIGEVYYKRADMAIGSLTINEERSEIVDFSVPFVET
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) T





SSSS

TT
TTS
S
SS
B

SB



SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence GISVMVARTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKKFQRPQDQYPPFRFGTVP
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)

S





S


TTS



SS







S
 .........570.........580.........590.........600.........610.........620.........630
Sequence NGSTERNIRSNYRDMHTHMVKFNQRSVEDALTSLKMGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVF
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) SSS
TTTS


S
TTS
S
TTS
STT
TTTT

 .........640.........650.........660.........670.........680.........690.........700
Sequence ATTGYGIAMQKDSHWKRAIDLALLQFLGDGETQKLETVWLSGICQNEKNEVMSSKLDIDNMAGVFYMLLV
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) B


TT
SSTTTS

TTTT



S


S
SSSS
 .........710.......
Sequence AMGLALLVFAWEHLVYW
Predicted secondary structure


SS confidence
















Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D