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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7ochL_

Fold library idPDB HeaderMoleculeTitle
c7ochL_3.14PDB header: viral proteinChain: L: PDB Molecule: rna-directed rna polymerase l;


Added to library: Sat Dec 4 08:40:46 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GVESLNVLLDNRSSHYEEIIASCHQGINNKLTAHEVKLQIEEEYQVFRNRLRKGEITGQFLKVDKSRLLN
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Known secondary structure (DSSP)
GGGGGGS




TTSS





TTTSS




 .........80.........90.........100.........110.........120.........130.........140
Sequence DFNNLYVDEVTATKDNIEHLIYQFKRASPILRFLYANIGEGNGEERHHTIKECQMQYWRSFLNKVKSLKL
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Known secondary structure (DSSP) TTTTTT


SS

TTSSTTS





SGGGS

T

 .........150.........160.........170.........180.........190.........200.........210
Sequence LLIFDALILLASIHDQTRHKCSKGWLGSCFISVNDRLVSLESTKRDLEKWVGRRQQSERSPPDKNQILIS
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Known secondary structure (DSSP)



STT

SSS



S



 .........220.........230.........240.........250.........260.........270.........280
Sequence MFQKTILKATAALKDVGISVEHYKINMEVICPDSYDLILNFDVSGVVPTISYQEKFPFIMGGVELLESTD
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Known secondary structure (DSSP) TTTT

STTTT

GGGS
SS
TT
















S
S

S
SSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LERLSSLSLALVNSMKTSSTVEAYCQEFLLSGAEFQLIYQKTGECSKCYAINDNRVGEICSFYADPKRYF
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Known secondary structure (DSSP) TT







SSS
S

SSS



SSSS




SSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence PAIFSAEVLQTTVSTMISWVKDCSELEEQLCNINSLTKMILVLILAHPSKRSQKLLQNLRYFIMAYVSDY
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Known secondary structure (DSSP) SSSS
STSTTS
SSSSTT
SS

TTTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence HHKDLIDKLREELITDVEFLLYRLVRALVNLILSEDVKSMMTNRFKFILNISYMCHFITKETPDRLTDQI
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Known secondary structure (DSSP) SSSTTTS




SS
SS

S
SS
GGGT
SS
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence KCFEKFLEPKLEFGHVSINPADVATEEELDDMVYNAKKFLSKEGCTSIKGPDYKKPGVSKRFLSLLTSSF
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Known secondary structure (DSSP) TT

BS


SS

T



SSSSS


SS




 .........570.........580.........590.........600.........610.........620.........630
Sequence NNGSLFKESEVKESPQSYSSTGPDTGRLKFSLSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEALSLQLS
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Known secondary structure (DSSP) TSS

STT






TTTT



SSS
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence GSCLNNEREFENAILSMKLNVSLAHVSYSMDHSKWGPMMCPFLFLATLQNLIFLSADIKGRDYLSTLLTW
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Known secondary structure (DSSP)
B
SS
ST

BSS
GGG

TT





 .........710.........720.........730.........740.........750.........760.........770
Sequence HMHKMVEIPFNVVSAMMKSFIKAQLQSITEDFFYSNFQIGVVPSHVSSILDMGQGILHNTSDFYALISER
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Known secondary structure (DSSP) T





TTS



B
SS


TTTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence FINYAISCICGGTIDAYTSSDDQISLFDQVLTELMQRDPEEFKTLIEFHYYMSDQLNKFVSPKSVIGRFV
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Known secondary structure (DSSP) SS





SS


TTT

B
TT
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence AEFKSRFYVWGDEVPLLTKFVAAALHNIKCKEPHQLAETIDTIIDQSVANGVPVHLCNLIQKRTLSLLQY
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Known secondary structure (DSSP) SSS

SSS



S


SS
TTTTTT

GGG
 .........920.........930.........940.........950.........960.........970.........980
Sequence ARYPIDPFLLNCETDVRDWVDGNRSYRIMRQIERLIPDACGRIRSMLRKLYNKLKTGQLHEEFTTNYLSS
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Known secondary structure (DSSP) TT



TTS

TT

TT

STTSSTTTSSSTTTTTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence EHLSSLSNLCELLGVEPPSESDLEFSWLNLAAHHPLRMVLQSSIASGFVGLCRTLGSKCVRGPNKESLYI
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Known secondary structure (DSSP)
STTS



TTSS

S
SSS







STTT


B
SSS
B

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KSIQSLISDIQGIEPLIDSHGVQYWRVPLNIRDGNEGVISYFRPLLWDYMCISLSTAIELGAWVLGEPKK
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Known secondary structure (DSSP) T
TT

SS



SSTTTT

SSTTSS
S
TTS



 .........1130.........1140.........1150.........1160.........1170.........1180.
Sequence KHNPCDYFPLKPAAIKFLDLCVALDVNCEALSLVSHIVKWKREEHYIVLSSELRLSHTRTH
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Known secondary structure (DSSP)


S







ST
TT

TTGGGTT



S
TTSSSS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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