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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7obaB_

Fold library idPDB HeaderMoleculeTitle
c7obaB_3.10PDB header: transcriptionChain: B: PDB Molecule: dna-directed rna polymerase i subunit rpa2;


Added to library: Sat Dec 11 08:57:54 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDPGSRWRNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKD
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Known secondary structure (DSSP)

TTSS
TT

SS


TTSSSSSTTS

SS

TTTSSSSTTTTSSSSS


SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ERISFTILDAVISPPTVPKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIM
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Known secondary structure (DSSP) S



B

TT


S

B

TT




TT




 .........150.........160.........170.........180.........190.........200.........210
Sequence VKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGV
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Known secondary structure (DSSP) TTSSSSTTTT

TTT

SS




TT

BSS

GGGGGSSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRN
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Known secondary structure (DSSP) TTTTTS
SSS


B



TSSS

S
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence SVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMT
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Known secondary structure (DSSP) TT

STSTTTT

TT

TTTTTTTTS
TT
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence RKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIF
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Known secondary structure (DSSP) TTSS



SSSGGG
TTTTT





SS


TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence TMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLL
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Known secondary structure (DSSP) TSS

TT




SS
TT
S
SS




SSTTSS

SSTTSS

SGGGS

 .........500.........510.........520.........530.........540.........550.........560
Sequence PESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHRSYSECYPVLLDG
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Known secondary structure (DSSP) GGGTTTB
SS
S
SSTTTTTB
SS







STTSSS

SS
TTSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGK
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Known secondary structure (DSSP) TTTSSTTTTTTTTT
TT

TT



SSS
S



SS
TTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence EELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL
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Known secondary structure (DSSP) TTGGGT



SSSTT

SSS

SSTTTTS
SSTTTTTS
TTTTTSB




 .........710.........720.........730.........740.........750.........760.........770
Sequence LTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAH
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Known secondary structure (DSSP) S
TTT


SSS



S
TTTTTSS





SSS

SSTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence GSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMY
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Known secondary structure (DSSP) SSSS

SSTT



TT
GGGTTTB
TTSSB
SS

TT

TTT

B

 .........850.........860.........870.........880.........890.........900.........910
Sequence YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMV
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Known secondary structure (DSSP)


SS



SSS


S





TT

SSS


GGGS

BSSS

 .........920.........930.........940.........950.........960.........970.........980
Sequence PDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLY
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Known secondary structure (DSSP)
S
SSSSTTT

TTTT



TT


SSS
SSSSTTS
TTS
B
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGIRFGEMERDALLAHGTSFLLHDR
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Known secondary structure (DSSP)
SSS
S

SS
BS









SS

B
SSS
SB





T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMN
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Known secondary structure (DSSP) TTSSTTT

SS
B





TTSSSS





BTTTTB
S
TTTTTT
 .......
Sequence IKVKLDV
Predicted secondary structure

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Known secondary structure (DSSP)







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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