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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7mexA_

Fold library idPDB HeaderMoleculeTitle
c7mexA_3.35PDB header: transferaseChain: A: PDB Molecule: e3 ubiquitin-protein ligase ubr1;


Added to library: Sat Nov 27 08:42:57 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GSLQGHIRRTLRSIHNLPYFRYTRGPTERADMSRALKEFIYRYLYFVISNSGENLPTLFNAHPKQKLLTV
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Known secondary structure (DSSP)
TSTTSTTTSS


SGGG
SS
SS
SS



S
 .........80.........90.........100.........110.........120.........130.........140
Sequence FPDSLEDAVDIDKITSQQTIPFYKIDESRIGDVHKHTGRNCGRKFKIGEPLYRCHECGCDDTCVLCIHCF
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Known secondary structure (DSSP) S

SS
TT



TT


STT






SSS



B

TT
TTTBSSSS



TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NPKDHVNHHVCTDICTEFTSGICDCGDEEAWNSPLHCKAEEQEDVWNDSVNIALVELVLAEVFDYFIDVF
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Known secondary structure (DSSP)
GGG
TT



TT


B

TT
TTTBSS






SSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence NQNIEPLPTIQKDITIKLREMTQQGKMYERAQFLNDLKYENDYMFDKIDPENYTVIIYNDEYHNYSQATT
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Known secondary structure (DSSP) T

TT
TT
S


SSS



S


SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence ALRQGVPDNVHIDLLTSRIDGEGRAMLKCSQDLSSVLGGFFAVQTNGLSATLTSWSEYLHQETCKYIILW
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Known secondary structure (DSSP)
TTSTTTTTTTSTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence ITHCLNIPNSSFQTTFRNMMGKTLCSEYLNATECRDMTPVVEKYFSNKFDKNDPYRYIDLSILADGNQIP
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Known secondary structure (DSSP) TT
S
SB
TTTTTS



GGG

TT
TTTTGGGT


TTS


 .........430.........440.........450.........460.........470.........480.........490
Sequence LGHHKILPESSTHSLSPLINDVETPTSRTYSNTRLQHILYFDNRYWKRLRKDIQNVIIPTLASSNLYKPI
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Known secondary structure (DSSP)




B

GGG
SS

SSS


B

S





BGGGTS

TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence FCQQVVEIFNHITRSVAYMDREPQLTAIRECVVQLFTCPTNAKNIFENQSFLDIVWSIIDIFKEFCKVEG
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Known secondary structure (DSSP) TTS
S
GGG
TTSSSTSTTTS
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence GVLIWQRVQKSNLTKSYSISFKQGLYTVETLLSKVHDPNIPLRPKEIISLLTLCKLFNGAWKIKRKEGEH
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Known secondary structure (DSSP) T




S

TT
T
S
TTGGGSTTTT


B



SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence VLHEDQNFISYLEYTTSIYSIIQTAEKVSEKSKDSIDSKLFLNAIRIISSFLGNRSLTYKLIYDSHEVIK
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Known secondary structure (DSSP)
SS


T
SS


T




SSTT


 .........710.........720.........730.........740.........750.........760.........770
Sequence FSVSHERVAFMNPLQTMLSFLIEKVSLKDAYEALEDCSDFLKISDFSLRSVVLCSQIDVGFWVRNGMSVL
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Known secondary structure (DSSP)

TTTS
B
S

S
TS
SS

TTTTTTTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence HQASYYKNNPELGSYSRDIHLNQLAILWERDDIPRIIYNILDRWELLDWFTGEVDYQHTVYEDKISFIIQ
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Known secondary structure (DSSP) TT
SS

T
TT
TT
TTSS
GGGSTTGGG
 .........850.........860.........870.........880.........890.........900.........910
Sequence QFIAFIYQILTERQYFKTFSSLKDRRMDQIKNSIIYNLYMKPLSYSKLLRSVPDYLTEDTTEFDEALEEV
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Known secondary structure (DSSP)

STTB

S
TTS
S
GGGSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence SVFVEPKGLADNGVFKLKASLYAKVDPLKLLNLENEFESSATIIKSHLAKDKDEIAKVVLIPQVSIKQLD
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Known secondary structure (DSSP)


SSS



SGGGGG

TTSGGG
SS
SSSSSTTTTTS







TTB
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KDALNLGAFTRNTVFAKVVYKLLQVCLDMEDSTFLNELLHLVHGIFRDDELINGKDSIPEAYLSKPICNL
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Known secondary structure (DSSP) GGGGGGGST

TT
TT


TTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LLSIANAKSDVFSESIVRKADYLLEKMIMKKPNELFESLIASFGNQYVNDYKDKKLRTEKERKRRLAKKH
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Known secondary structure (DSSP) SS
TTSS
STTT

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence QARLLAKFNNQQTKFMKEHESEFTCALCQDSSSTDFFVIPAYHDHSPIFRPGNIFNPNEFMPMWDGFYND
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Known secondary structure (DSSP) TT



SSSTT



S


TT

B

SS
SS


S



 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence DEKQAYIDDDVLEALKENGSCGSRKVFVSCNHHIHHNCFKRYVQKKRFSSNAFICPLCQTFSNCTLPLCQ
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Known secondary structure (DSSP) TTS




TT
TT




TT
BTTB
TTT







 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence TSKANTGLSLDMFLESELSLDTLSRLFKPFTEENYRTINSIFSLMISQCQGFDKAVRKRANFSHKDVSLI
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Known secondary structure (DSSP) B

SS



T

SGGGB




SSS
SSS

GGG
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LSVHWANTISMLEIASRLEKPYSISFFRSREQKYKTLKNILVCIMLFTFVIGKPSMEFEPYPQQPDTVWN
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Known secondary structure (DSSP) GGGSS
TTTTTTTT
T



TT

SS


SS

S
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence QNQLFQYIVRSALFSPVSLRQTVTEALTTFSRQFLRDFLQGLSDAEQVTKLYAKASKIGDVLKVSEQMLF
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Known secondary structure (DSSP) TTTSSS
TT
S
TTTS





 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence ALRTISDVRMEGLDSESIIYDLAYTFLLKSLLPTIRRCLVFIKVLHELVKDSENETLVINGHEVEEELEF
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Known secondary structure (DSSP)






SS
TS
SSSS


TTTT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence EDTAEFVNKALKMITEKESLVDLLTTQESIVSHPYLENIPYEYCGIIKLIDLSKYLNTYVTQSKEIKLRE
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Known secondary structure (DSSP)

TTSSSSSS






GGGSS


B

S


S



SBTTTTTTS


B
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence ERSQHMKNADNRLDFKICLTCGVKVHLRADRHEMTKHLNKNCFKPFGAFLMPNSSEVCLHLTQPPSNIFI
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Known secondary structure (DSSP)
SSS

SSGGG


TTT



S

SSS
SSTTTTTTTT
 .........1690.........1700.........1710.........1720.........1730.......
Sequence SAPYLNSHGEVGRNAMRRGDLTTLNLKRYEHLNRLWINNEIPGYISRVMGDEFRVTI
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Known secondary structure (DSSP)
STTS

TGGG


TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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