PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7eebF_

Fold library id	PDB Header	Molecule	Title
c7eebF_	2.90	PDB header: protein transport	Chain: F: PDB Molecule: cation channel sperm-associated protein subunit gamma 2;

Links to external resources
Added to library: Sat Jul 31 08:37:54 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H C T W L L V L N K F E K V G L H L S K D R F Q D H E P I D T V A K V F Q K L T D S P I D P S E N Y L S F P Y Y L Q I N F S C P G Q N I E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T T
S
S
B
T T
S S S
T T S
B
S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L A R K G H L M G M K P M V Q I N Y M Y S V N F Y R W E M E N V Q I L M E A A P M R S T G Y C P A E A M C V L N W Y T P M P F K N G S V V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T T S
S S
S S S S
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S V D I Y T N G I G P F V S K K R F Y V N M N G F L K R D A S G K S L F A I G Y E S L V L K S S H F R L S K S R P L W Y T V N H A P V F I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
S
S S
S S
S
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G G F Y D E K S I L F S D S N F Q D Y V L L E L S I D S C W V G S F Y C P I L G F S A T I H D A I A T E S T L F I R Q N Q L V Y Y F T G T Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S T T T T S
S S S
T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence I T L F D K S H G S S R W V R V L P S E C I K R L C P V Y A S G N G S E Y V L A L T T G K N E G Y I H I G T I T D G L V S F E M V P D G W S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S T T S
S S
S S S
S
S S
S S S T T
T T T T T T S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence V C E K L P G K N C S I D W A T Y I A D E R N L L L L V K I D S G Q F Y L V N F N T E F K T L N I L Y K I P E F I P E A K E L D F L V L L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T S S S S
T G G G T T S
T T T T
S S
B
S S
S
S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence T V T Y T N T P M T P K G L F F N T L N N M L Y I W G N F I L Q S Y N R E E F I F L A D F P K E S T I K Y M V N S F K G Q M A V V T E N E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
S S
T T T T S S S S T T S
T T S
T T S
S S S T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence I W Y F L E G G Y D V Y Q V V P S Q G W E T Y H N L Q K M Q K S S F H S E D E S L V S L F F E D G K L F Q L V Y L F D V G K E R L V K R L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S S S T T
S S
S S T T
T T T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence P V G T L M E Y N L P K P F T V V N Q G N Y Q A I S F T H T C P F K E I H L I D V P K K H H A S R T E S Y V A L P P L V S E S L G F H N N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
S S S S
T
S S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence T L A V Y Q G L V Y Y L L W L H S K Y D K P Y A D P V H D P T W R W W Q H K T K D K D Y F F Y L F S N R L A A E G I Y I N M N A Y Q K L Y N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S B
S S S S T G G G G G G T T
S T T S
G G G S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence M S G D Y G I P D L F F L D K G N W F T I T V V L L S H Q D T F T S S D S Q G P T I N V D K K L A I A V T I A D P E C L S V T V T Q D V L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S
T T
T T S
G G G B
S S S B
S
S S G G G
T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence N R N A V I N K I K V I D K K R C S E Q G M I G R N I K K T S M M L K V L G A P G N C I Q R T Y L G G I I Q G F K V V P I F I G C P P G K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
S
S B
G G G S
T T
T T T
T T
S S
T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence L A F D V S Y T I M H S E E I N K H Y F D C V I K D A E M P C F L F R D L F Q P F F L V Q D L V T G D S G S F L G S Y V L K V V G G G R T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S
T T S
B
S S S S
S
B S S T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence N T I R D Y T E E E I F R Y N S P L D T T N S L I W K T K V E R T T E D K K F Y I M S H E S P G V E W L C L E N S P C Y D I I P Q S I Y P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S S
S
S
B
G G G
S B
B
T T S
B
T T S T T S S
S S S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . .

Sequence E F F F K L L V S N R G V D N S T Y C D Y K L T F I V H I H G L P L S S K R T S F I V M V S T S F F I A L V V F Y I L F C L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S
S B
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	C	T	W	L	L	V	L	N	K	F	E	K	V	G	L	H	L	S	K	D	R	F	Q	D	H	E	P	I	D	T	V	A	K	V	F	Q	K	L	T	D	S	P	I	D	P	S	E	N	Y	L	S	F	P	Y	Y	L	Q	I	N	F	S	C	P	G	Q	N	I	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	T	T	T	T	T			S								S		B		T	T									S	S	S			T	T	S				B		S										T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	A	R	K	G	H	L	M	G	M	K	P	M	V	Q	I	N	Y	M	Y	S	V	N	F	Y	R	W	E	M	E	N	V	Q	I	L	M	E	A	A	P	M	R	S	T	G	Y	C	P	A	E	A	M	C	V	L	N	W	Y	T	P	M	P	F	K	N	G	S	V	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T													S		T	T	T	S																	S	S			S	S	S	S			S											T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	V	D	I	Y	T	N	G	I	G	P	F	V	S	K	K	R	F	Y	V	N	M	N	G	F	L	K	R	D	A	S	G	K	S	L	F	A	I	G	Y	E	S	L	V	L	K	S	S	H	F	R	L	S	K	S	R	P	L	W	Y	T	V	N	H	A	P	V	F	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	S	S														S					S	S						S	S														S										T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	G	F	Y	D	E	K	S	I	L	F	S	D	S	N	F	Q	D	Y	V	L	L	E	L	S	I	D	S	C	W	V	G	S	F	Y	C	P	I	L	G	F	S	A	T	I	H	D	A	I	A	T	E	S	T	L	F	I	R	Q	N	Q	L	V	Y	Y	F	T	G	T	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S	S							T	T	T	T	S																S	S	S																T	T							T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	I	T	L	F	D	K	S	H	G	S	S	R	W	V	R	V	L	P	S	E	C	I	K	R	L	C	P	V	Y	A	S	G	N	G	S	E	Y	V	L	A	L	T	T	G	K	N	E	G	Y	I	H	I	G	T	I	T	D	G	L	V	S	F	E	M	V	P	D	G	W	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	S		S	T	T	S		S	S						S	S	S										S			S	S										S	S	S	T	T									T	T							T	T	T	T	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	V	C	E	K	L	P	G	K	N	C	S	I	D	W	A	T	Y	I	A	D	E	R	N	L	L	L	L	V	K	I	D	S	G	Q	F	Y	L	V	N	F	N	T	E	F	K	T	L	N	I	L	Y	K	I	P	E	F	I	P	E	A	K	E	L	D	F	L	V	L	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	T	S	S	S	S											T	G	G	G									T	T	S									T	T	T	T										S	S		B			S	S		S						S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	T	V	T	Y	T	N	T	P	M	T	P	K	G	L	F	F	N	T	L	N	N	M	L	Y	I	W	G	N	F	I	L	Q	S	Y	N	R	E	E	F	I	F	L	A	D	F	P	K	E	S	T	I	K	Y	M	V	N	S	F	K	G	Q	M	A	V	V	T	E	N	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			B		S	S											T	T	T	T							S	S					S	S	T	T	S					T	T	S		T	T	S									S	S	S							T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	I	W	Y	F	L	E	G	G	Y	D	V	Y	Q	V	V	P	S	Q	G	W	E	T	Y	H	N	L	Q	K	M	Q	K	S	S	F	H	S	E	D	E	S	L	V	S	L	F	F	E	D	G	K	L	F	Q	L	V	Y	L	F	D	V	G	K	E	R	L	V	K	R	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S	S						S	S	S													T	T		S	S			S	S										T	T											T	T	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	P	V	G	T	L	M	E	Y	N	L	P	K	P	F	T	V	V	N	Q	G	N	Y	Q	A	I	S	F	T	H	T	C	P	F	K	E	I	H	L	I	D	V	P	K	K	H	H	A	S	R	T	E	S	Y	V	A	L	P	P	L	V	S	E	S	L	G	F	H	N	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T												T	T											S	S	S						S									T														S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	T	L	A	V	Y	Q	G	L	V	Y	Y	L	L	W	L	H	S	K	Y	D	K	P	Y	A	D	P	V	H	D	P	T	W	R	W	W	Q	H	K	T	K	D	K	D	Y	F	F	Y	L	F	S	N	R	L	A	A	E	G	I	Y	I	N	M	N	A	Y	Q	K	L	Y	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T		S	B			S	S	S	S	T						G	G	G	G	G	G										T	T		S	T	T	S					G	G	G					S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	M	S	G	D	Y	G	I	P	D	L	F	F	L	D	K	G	N	W	F	T	I	T	V	V	L	L	S	H	Q	D	T	F	T	S	S	D	S	Q	G	P	T	I	N	V	D	K	K	L	A	I	A	V	T	I	A	D	P	E	C	L	S	V	T	V	T	Q	D	V	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S		S			S						T	T													T	T	S			G	G	G	B		S	S	S	B						S							S	S	G	G	G											T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	N	R	N	A	V	I	N	K	I	K	V	I	D	K	K	R	C	S	E	Q	G	M	I	G	R	N	I	K	K	T	S	M	M	L	K	V	L	G	A	P	G	N	C	I	Q	R	T	Y	L	G	G	I	I	Q	G	F	K	V	V	P	I	F	I	G	C	P	P	G	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T												S		S			S	B		G	G	G	S											T	T		T	T	T						T	T						S									S			T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	L	A	F	D	V	S	Y	T	I	M	H	S	E	E	I	N	K	H	Y	F	D	C	V	I	K	D	A	E	M	P	C	F	L	F	R	D	L	F	Q	P	F	F	L	V	Q	D	L	V	T	G	D	S	G	S	F	L	G	S	Y	V	L	K	V	V	G	G	G	R	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S	S						T	T			S	S						T	T	S		B									S	S	S	S							S		B									S	S	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	N	T	I	R	D	Y	T	E	E	E	I	F	R	Y	N	S	P	L	D	T	T	N	S	L	I	W	K	T	K	V	E	R	T	T	E	D	K	K	F	Y	I	M	S	H	E	S	P	G	V	E	W	L	C	L	E	N	S	P	C	Y	D	I	I	P	Q	S	I	Y	P	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																T	T			S	S			S						S		B		G	G	G		S	B		B		T	T	S			B						T	T	S	T	T	S	S				S	S	S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.
Sequence	E	F	F	F	K	L	L	V	S	N	R	G	V	D	N	S	T	Y	C	D	Y	K	L	T	F	I	V	H	I	H	G	L	P	L	S	S	K	R	T	S	F	I	V	M	V	S	T	S	F	F	I	A	L	V	V	F	Y	I	L	F	C	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T			S		S	B																																									T	T