Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7aodB_

Fold library idPDB HeaderMoleculeTitle
c7aodB_4.50PDB header: transcriptionChain: B: PDB Molecule: probable dna-directed rna polymerase i subunit rpa2;


Added to library: Sat Feb 27 08:32:33 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSFQTLERERTFKNPPKDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALK
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP)



SS

SSS
S
STTTT







TT
SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence FGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSVNGGPRQSEMREVGMI
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)






BSSSS

SS


B

TT




SSSS


 .........150.........160.........170.........180.........190.........200.........210
Sequence PIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQ
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)
BTTSTTSTTTT

TTS
TT




TT

BS


GGGTTTSTTS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence YGLSIRCVRPDQSSLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTF
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)

TTS


TTS
TTS


S
SSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence LTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLREAKDKFRLLL
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TT

SSTTTS


SSS
STTTTT


 .........360.........370.........380.........390.........400.........410.........420
Sequence FMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDRK
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TTSS



SSSGGG
SS
SS

TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence YLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKT
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) S








SS

S
S

S




SSB

TS
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence TTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPSLLLSLGVDPPSVVGHESGWGC
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) SSTTS

S

TTTB
SS



STTTTTS
BB
SS






TTTT



SS



TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSN
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) SS
TTS


S
SS
TT





TTSS




 .........640.........650.........660.........670.........680.........690.........700
Sequence PARMVRPVKHISTGELDMLGPFEQVYMDIACFPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRN
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) SSTTTT
TTTGGG

SSTTT

TTT


S
GGGGS
SSTTTTSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence MYQCQMGKQTMGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMED
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) TT

S


S

TT


SSS



S
TTTGGG





SSS

TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence AMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLED
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)
B
TT
S
SSTT

SSS
S

S

SS


TTTB
SSS
B
TT

B
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence GDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKG
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP) S


TTT

B




SS
B




SSSS






TT
TTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence ICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQDSTPFIYSEQQTAADY
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP) B




TTSS
B
SS



S
GGGSTTTT
T



TT
S
SSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMFQVRTTGPIHNLTRQPVKIRFGEMER
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) TS
TTS

B
TTT
SB
SS








SS

B
SSS

B





SS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence DAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCAKTSDIWQDGSGK
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) T
TTTT


TTT

SSS




SSS
S



STTB


S
B

SS

 .........1130.........1140.........1150......
Sequence KFVGGTNTTLIALPSVFNYLTAELTAMNIKMMLEVK
Predicted secondary structure

















SS confidence



































Known secondary structure (DSSP)
B
B




TTT








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D