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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6wjvA_

Fold library idPDB HeaderMoleculeTitle
c6wjvA_3.50PDB header: cell cycleChain: A: PDB Molecule: dna polymerase epsilon catalytic subunit a;


Added to library: Sat Jul 11 08:48:33 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALSAQQLLNASKIDDIDSMMGFERYVPPQYNGRFDAKDIDQIPGRVGWLTNMHATLVSQEVTTNQGISGV
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Known secondary structure (DSSP)
TTTT

B










SS

SSS











S


 .........80.........90.........100.........110.........120.........130.........140
Sequence DFYFLDEEGGSFKSTVVYDPYFFIACNDESRVNDVEELVKKYLESCLKSLQIIRKEDLTMDNHLLGLQKT
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Known secondary structure (DSSP)


TTS










S
SSSTTTT

B
TTSTTGGGT

 .........150.........160.........170.........180.........190.........200.........210
Sequence LIKLSFVNSNQLFEARKLLRPILQDNADAKHLIEDIREYDVPYHVRVSIDKDIRVGKWYKVTQQGFIEDT
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Known secondary structure (DSSP)
S



TT
S
SS
TT

TTSTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence RKIAFADPVVMAFDIETTKPPLKFPDSAVDQIMMISYMIDGEGFLITNREIISEDIEDFEYTPKPEYPGF
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Known secondary structure (DSSP) S

S








TTS


SSS

TTTTT
SS





SSTTS

 .........290.........300.........310.........320.........330.........340.........350
Sequence FTIFNENDEVALLQRFFEHIRDVRPTVISTFNGDFFDWPFIHNRSKIHGLDMFDEIGFAPDAEGEYKSSY
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Known secondary structure (DSSP) SS

SSS




SSS
GGGTS




TTS



SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence CSHMDCFRWVKRDSYLPQGSQGLKAVTQSKLGYNPIELDPELMTPYAFEKPQHLSEYSVSDAVATYYLYM
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Known secondary structure (DSSP) S

TTTTS


TTS
STSS






GGGTTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence KYVHPFIFSLCTIIPLNPDETLRKGTGTLCEMLLMVQAYQHNILLPNKHTDPIERFYDGHLLESETYVGG
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Known secondary structure (DSSP) TTSSS
S
TTB








S

TT
S




 .........500.........510.........520.........530.........540.........550.........560
Sequence HVESLEAGVFRSDLKNEFKIDPSAIDELLQELPEALKFSVEVENKSSVDKVTNFEEIKNQITQKLLELKE
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Known secondary structure (DSSP)




SSS




SSSTS
S
STT
SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence NNIRNELPLIYHVDVASMYPNIMTTNRLQPDSIKAERARKLKWAWRGEFFPSKMDEYNMIKRALQNETFP
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Known secondary structure (DSSP) S
S




BTT


TT
S



S

TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence NKNKFSKKKVLTFDELSYADQVIHIKKRLTEYSRKVYHRVKVSEIVEREAIVCQRENPFYVDTVKSFRDR
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Known secondary structure (DSSP)
S
SSSS


STTS
SSSS
S

TTS
T
 .........710.........720.........730.........740.........750.........760.........770
Sequence RYEFKGLAKTWKGNLSKIDPSDKHARDEAKKMIVLYDSLQLAHKVILNSFYGYVMRKGSRWYSMEMAGIT
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Known secondary structure (DSSP)


SSS

TTSTT
SS
SS

 .........780.........790.........800.........810.........820.........830.........840
Sequence CLTGATIIQMARALVERVGRPLELDTDGIWCILPKSFPETYFFTLENGKKLYLSYPCSMLNYRVHQKFTN
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Known secondary structure (DSSP) TTS
SS

TTS


SSS
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence HQYQELKDPLNYIYETHSENTIFFEVDGPYKAMILPSSKEEGKGIKKRYAVFNEDGSLAELKGFELKRRG
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Known secondary structure (DSSP) S
SSS





B




BS


SSTT


TT

TTSSB

SS
SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence ELQLIKNFQSDIFKVFLEGDTLEGCYSAVASVCNRWLDVLDSHGLMLEDEDLVSLICENRSMSKTLKEYE
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Known secondary structure (DSSP) S
S

SSTTTSSS
S
B

B
SS
SGGGT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence GQKSTSITTARRLGDFLGEDMVKDKGLQCKYIISSKPFNAPVTERAIPVAIFSADIPIKRSFLRRWTLDP
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Known secondary structure (DSSP) T


S
SSSSSSS

B

BS
STT

GGG
GGGSSS


T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence SLEDLDIRTIIDWGYYRERLGSAIQKIITIPAALQGVSNPVPRVEHPDWLKRKIATVGWLNYQKIKWKIQ
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Known secondary structure (DSSP) T




B
TTTTTTTTT


S
SSS


TT



TT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence ARDRKRRDQLFGNTNSSRERSALGSMIRKQAESYANSTWEVLQYKDSGEPGVLEVFVTINGKVQNITFHI
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Known secondary structure (DSSP)
SSTTGGGSSSS

TTTT

S






SS
TT
SSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence PKTIYMKFKSQTMPLQKIKNCLIEKSSASLPNNPKTSNPESVFLEEKENCTSIFNDENVLGVFEGTITPH
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Known secondary structure (DSSP)



B



SS
TTTTT














SSTT





S
SS




SS


SSSSS



B


T
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence QRAIMDLGASVTFRSKAMGALGKGIQQGFEMKDLSMAENERYLSGFSMDIGYLLHFPTSIGYEFFSLFKS
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Known secondary structure (DSSP) TSSSTTTS
SB

S
SSS
TTSS
B



SS









SSS



T
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence WGDTITILVLKPSNQAQEINASSLGQIYKQMFEKKKGKIETYSYLVDIKEDINFEFVYFTDISKLYRRLS
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Known secondary structure (DSSP) TT





SS
SS

S

SSTTT



S








S
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence QETTKLKEERGLQFLLLLQSPFITKLLGTIRLLNQMPIVKLSLNEVLLPQLNWQPTLLKKLVNHVLSSGS
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Known secondary structure (DSSP) SSSS



SSSTTTTTTTS
SS






S






TT

GGGTTTTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence WISHLIKLSQYSNIPICNLRLDSMDYIIDVLYARKLKKENIVLWWNEKAPLPDHGGIQNDFDLNTSWIMN
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Known secondary structure (DSSP) S


TTS

SS

SSSSS



SSSS


SS
SSSTTS
TT
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence DSEFPKINNSGVYDNVVLDVGVDNLTVNTILTSSNDALNVLRGMLKEWWDEALKENSTADLLVNSLASWV
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Known secondary structure (DSSP)









S
SS






B

TTTT


SSSS
SSSSS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence QNPNAKLFDGLLRYHVHNLTKKALLQLVNEFSALGSTIVYADRNQILIKTNKYSPENCYAYSQYMMKAVR
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Known secondary structure (DSSP) S
TTSSS

SSTTTSS
SSS


S
BSSS
B




SS

STT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence TNPMFSYLDLNIKRYWDLLIWMDKFNFSGLACIEIEEKENQDYTAVSQWQLKKFLSPIYQPEFEDWMMII
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Known secondary structure (DSSP) STTSS



B




SS


SSSS







SS
SS








STTSSS


TT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LDSMLKTKQSYLKLNEDSVENSLNGFSHLFSKPLMKRVKKLFKNQQEFILDPQYESHLNVKNPLLELVKS
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Known secondary structure (DSSP)

S
SS
S


STTTTTS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LCHVMLLSKSTILEISLVVPDFLCEYCFFISDIDFCKFSCVRCHKAFNQVLLQEHLIQKLRSDIESYLIQ
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Known secondary structure (DSSP)
SS

SSSS

SS







B

SSS


B


S




SSS




STT
 .........1900.........1910.........1920.........1930.........1940.........1950.
Sequence DLRCSRCHKVKRDYMSAHCPCAGAWEGTLPRESIVQKLNVFKQVAKYYGFDILLSCIADLT
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Known secondary structure (DSSP)



SS

S



SS
SS
SSS




SS
S

T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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