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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6vsjB_

Fold library idPDB HeaderMoleculeTitle
c6vsjB_3.94PDB header: viral proteinChain: B: PDB Molecule: spike glycoprotein;


Added to library: Sat Mar 7 08:25:39 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YIGDFRCIQLVNSNGANVSAPSISTETVEVSQGLGTYYVLDRVYLNATLLLTGYYPVDGSKFRNLALRGT
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Known secondary structure (DSSP)

SSB




S










S
B


TTSTT
B

TT



S



TT
B

B


S
 .........80.........90.........100.........110.........120.........130.........140
Sequence NSVSLSWFQPPYLNQFNDGIFAKVQNLKTSTPSGATAYFPTIVIGSLFGYTSYTVVIEPYNGVIMASVCQ
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Known secondary structure (DSSP) S
GGGSSTTTS


SS


GGGS
TT


SS

SS
STTS

TT


 .........150.........160.........170.........180.........190.........200.........210
Sequence YTICQLPYTDCKPNTNGNKLIGFWHTDVKPPICVLKRNFTLNVNADAFYFHFYQHGGTFYAYYADKPSAT
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Known secondary structure (DSSP)

BBSS

SS


SS
TT

SSB


S






TT
SB
TT


SSSS
B
 .........220.........230.........240.........250.........260.........270.........280
Sequence TFLFSVYIGDILTQYYVLPFICNPTAGSTFAPRYWVTPLVKRQYLFNFNQKGVITSAVDCASSYTSEIKC
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Known secondary structure (DSSP)





SS







SS
S





B
SSS
B


B
TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KTQSMLPSTGVYELSGYTVQPVGVVYRRVANLPACNIEEWLTARSVPSPLNWERKTFQNCNFNLSSLLRY
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Known secondary structure (DSSP) TSSS

SS




















B

TT
S
TTS

S
B

 .........360.........370.........380.........390.........400.........410.........420
Sequence VQAESLFCNNIDASKVYGRCFGSISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTAATSCQLHYTLPKN
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Known secondary structure (DSSP) S

BSS

TTTSTT

BS


STTGGGGSTT

SST



SSS


TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence NVTINNHNPSSWNRRYGFNDAGVFGKNQHDVVYAQQCFTVRSSFCPCATKPKSAFVNVGDHCEGLGVLED
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Known secondary structure (DSSP) T





S

TTTTTTT
SSS
BB


S


S





B



TT




B
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence NCGNADPHKGCICANNSFIGWSHDTCLVNDRCQIFANILLNGINSGTTCSTDLQLPNTEVVTGICVKYDL
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Known secondary structure (DSSP) S


SSSS

TT
S
TTSTT

SBB
SSS








SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence YGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAFHKDAPEPALLYRN
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Known secondary structure (DSSP) TT







SS



TTS

TTT










TT
SS

TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence INCSYVFSNNISREENPLNYFDSYLGCVVNADNRTDEALPNCDLRMGAGLCVDYSKSRRAHRSVSTGYRL
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Known secondary structure (DSSP)

TT

SS


S


SSS
S
SSS
STTT
TTT
SSSSSTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence TTFEPYTPMLVNDSVQSVDGLYEMQIPTNFTIGHHEEFIQTRSPKVTIDCAAFVCGDNTACRQQLVEYGS
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Known secondary structure (DSSP)
S







S
SSS

B
S

B













S
SSGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence FCVNVNAILNEVNNLLDNMQLQVASALMQGVTISSRSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGF
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Known secondary structure (DSSP) TT








SS

SSSTTTTTTTT
SS
TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence VEAYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTTGATAAAMFPPWSAAAGVPFSLSVQYRIN
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Known secondary structure (DSSP) TTSSTTSSTT


SS
TTS
SSS
SSTT

GG
 .........920.........930.........940.........950.........960.........970.........980
Sequence GLGVTMNVLSENQKMIASAFNNALGAIQDGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASL
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Known secondary structure (DSSP) GTS
TTSS

GGGS

SSS
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QEILTRLEAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKVSAAQAIEKVNECVKSQTTRINFCGNGN
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Known secondary structure (DSSP) S
TTTS

SSSS
SSSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence HILSLVQNAPYGLYFIHFSYVPISFTTANVSPGLCISGDRGLAPKAGYFVQDDGEWKFTGSSYYYPEPIT
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Known secondary structure (DSSP)






TTS




S



B

TT

S


SSS



S


B
SSSSB


SSB



SS
 ..
Sequence DK
Predicted secondary structure

SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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