Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6uebA_

Fold library idPDB HeaderMoleculeTitle
c6uebA_3.30PDB header: viral proteinChain: A: PDB Molecule: large structural protein;


Added to library: Sat Feb 8 08:49:33 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NILRNSDYNLNSPLIEDPARLMLEWLKTGNRPYRMTLTDNCSRSFRVLKDYFKKVDLGSLKVGGMAAQSM
Predicted secondary structure















































SS confidence





































































Known secondary structure (DSSP)







SS
S


SSSS

S
S




SS
TTS
B
TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence ISLWLYGAHSESNRSRRCITDLAHFYSKSSPIEKLLNLTLGNRGLRIPPEGVLSCLERVDYDNAFGRYLA
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP) S

SSTGGGT



SS
GGGGGGSS
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence NTYSSYLFFHVITLYMNALDWDEEKTILALWKDLTSVDIGKDLVKFKDQIWGLLIVTKDFVYSQSSNCLF
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)

SS
SSTTTTTTT


SS
TTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence DRNYTLMLKDLFLSRFNSLMVLLSPPEPRYSDDLISQLCQLYIAGDQVLSMCGNSGYEVIKILEPYVVNS
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP)
SS
SSTTS
S
GGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence LVQRAEKFRPLIHSLGDFPVFIKDKVSQLEETFGPCARRFFRALDQFDNIHDLVFVFGCYRHWGHPYIDY
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) TTSSTTS


SSTTTTT

SS
SSSS





 .........360.........370.........380.........390.........400.........410.........420
Sequence RKGLSKLYDQVHLKKMIDKSYQECLASDLARRILRWGFDKYSKWYLDSRFLARDHPLTPYIKTQTWPPKH
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)





SSSS



GGGS
SSSTTTTT



 .........430.........440.........450.........460.........470.........480.........490
Sequence IVDLVGDTWHKLPITQIFEIPESMDPSEILDDKSHSFTRTRLASWLSENRGGPVPSEKVIITALSKPPVN
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) TTT
GGGS




S


S


GGGT

S







S






S



 .........500.........510.........520.........530.........540.........550.........560
Sequence PREFLRSIDLGGLPDEDLIIGLKPKERELKIEGRFFALMSWNLRLYFVITEKLLANYILPLFDALTMTDN
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TS
S
TTS

SS


SS


TGGG
SSB
SS

 .........570.........580.........590.........600.........610.........620.........630
Sequence LNKVFKKLIDRVTGQGLLDYSRVTYAFHLDYEKWNNHQRLESTEDVFSVLDQVFGLKRVFSRTHEFFQKA
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TTTTSS
SSSS


SS

TTTTTTT
SSTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence WIYYSDRSDLIGLREDQIYCLDASNGPTCWNGQDGGLEGLRQKGWSLVSLLMIDRESQIRNTRTKILAQG
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) TT

TT



SSS


SSTTS



BS

SS

TTSS
SSBSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence DNQVLCPTYMLSPGLSQEGLLYELERISRNALSIYRAVEEGASKLGLIIKKEETMCSYDFLIYGKTPLFR
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) S


SS

TT



TTT
SS
TTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence GNILVPESKRWARVSCVSNDQIVNLANIMSTVSTNALTVAQHSQSLIKPMRDFLLMSVQAVFHYLLFSPI
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) T



TTT


TT



T
S
T
BTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence LKGRVYKILSAEGESFLLAMSRIIYLDPSLGGISGMSLGRFHIRQFSDPVSEGLSFWREIWLSSQESWIH
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) TTB


SSSS

TTTS
SSSS
SS


GGGTT
SS
S
S


S
 .........920.........930.........940.........950.........960.........970.........980
Sequence ALCQEAGNPDLGERTLESFTRLLEDPTTLNIRGGASPTILLKDAIRKALYDEVDKVENSEFREAILLSKT
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) S

B


STTTTTS
S


BTT


TGGG


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence HRDNFILFLISVEPLFPRFLSELFSSSFLGIPESIIGLIQNSRTIRRQFRKSLSKTLEESFYNSEIHGIS
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) TSSS

STT


S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence RMTQTPQRVGGVWPCSSERADLLREISWGRKVVGTTVPHPSEMLGLLPKSSISCTCGATGGGNPRVSVSV
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) T









S
SS


SS



TTTSS
S

SSS
S
TT
SS



 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LPSFDQSFFSRGPLKGYLGSSTSMSTQLFHAWEKVTNVHVVKRALSLKESINWFITRDSNLAQALIRNIM
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)
TT

SSSS


S








S
SS
SSS
S






TSTTTS
SSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence SLTGPDFPLEEAPVFKRTGSALHRFKSARYSEGGYSSVCPNLLSHISVSTDTMSDLTQDGKNYDFMFQPL
Predicted secondary structure















































SS confidence





































































Known secondary structure (DSSP) SS
S












SS
SS


TTTT
S




S
TTGGGG
GGGGGGGGS
TT




 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence MLYAQTWTSELVQRDTRLRDSTFHWHLRCNRCVRPIDDVTLETSQIFEFPDVSKRISRMVSGAVPHFQRL
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP) T
TT
TT





STT










S







TTT

SSSTTSS





 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence PDIRLRPGDFESLSGREKSHHIGSAQGLLYSILVAIHDSGYNDGTIFPVNIYGKVSPRDYLRGLARGVLI
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)









TTS
TT
GGGG
TTSS
SSSSSSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence GSSICFLTRMTNININRPLELVSGVISYILLRLDNHPSLYIMLREPSLRGEIFSIPQKIPAAYPTTMKEG
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) S

SSGGG
T
SGGGGGGGSSS






SS

 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence NRSILCYLQHVLRYEREIITASPENDWLWIFSDFRSAKMTYLSLITYQSHLLLQRVERNLSKSMRDNLRQ
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TTTSTTTTT
SSTT

B


SSS
SSS
SS


 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence LSSLMRQVLGGHGEDTLESDDNIQRLLKDSLRRTRWVDQEVRHAARTMTGDYSPNKKVSRKVGCSEWVCS
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP) S
SSS
S
S
STTTTGGGB


SS
TGGGGGTTTTS


















 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence AQQVAVSTSANPAPVSELDIRALSKRFQNPLISGLRVVQWATGAHYKLKPILDDLNVFPSLCLVVGDGSG
Predicted secondary structure


















































SS confidence





































































Known secondary structure (DSSP)



SS



SS





S



SSSS


S

SS
SSS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence GISRAVLNMFPDAKLVFNSLLEVNDLMASGTHPLPPSAIMRGGNDIVSRVIDLDSIWEKPSDLRNLATWK
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP)
SS






TTS
SSS





TSS
STTSTTS


TTSS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence YFQSVQKQVNMSYDLIICDAEVTDIASINRITLLMSDFALSIDGPLYLVFKTYGTMLVNPNYKAIQHLSR
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TT







S
ST

S
GGGGTSTT

STT
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence AFPSVTGFITQVTSSFSSELYLRFSKRGKFFRDAEYLTSSTLREMSLVLFNCSSPKSEMQRARSLNYQDL
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) S

SSS
TT


S







SSSSSSS
S
S
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence VRGFPEEIISNPYNEMIITLIDSDVESFLVHKMVDDLELQRGTLSKVAIIIAIMIVFSNRVFNVSKPLTD
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) TTS
SSSS

T





SS

SS


S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence PSFYPPSDPKILRHFNICCSTMMYLSTALGDVPSFARLHDLYNRPITYYFRKQVIRGNVYLSWSWSNDTS
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) S





T
S

SSSSS


S
 .........2040.........2050.........2060.........2070.........2080.........2090.........
Sequence VFKRVACNSSLSLSSHWIRLIYKIVKTTRLVGSIKDLSREVERHLHRYNRWITLEDIRSRSSLLDYSCL
Predicted secondary structure























SS confidence




































































Known secondary structure (DSSP) S



S


S



TSS

STTTTTTT
SSSSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D