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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6qp9B_

Fold library idPDB HeaderMoleculeTitle
c6qp9B_3.60PDB header: signaling proteinChain: B: PDB Molecule: semaphorin-1a;


Added to library: Sat Aug 24 08:23:58 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GPEDVLKFVGNESVVDHFKLVTKDGNSLLIGARNTVFNLSIHDLVEQQRLVWTSPEDDTKMCLVKGKDEE
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SB




SSS


TTTT
BS

TTT









TTT
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ACQNYIRIMVVPSPGRLFVCGTNSFRPMCNTYNYTLEATKNGQAVCPYDPRHNSTSVLADNELYSGTVAD
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Known secondary structure (DSSP) SSS
B

TT



TTT








TTTS
SSSSS


SS

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence FSGSDPIIYREPLQTEQYDSLSLNAPNFVSSFTQGDFVYFFFRETAVEFINCGKAIYSRVARVCKWDKGG
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Known secondary structure (DSSP) SS


BTTB


TT
TTT
SS




SS



S




 .........220.........230.........240.........250.........260.........270.........280
Sequence PHRFRNRWTSFLKSRLNCSIPGDYPFYFNEIQSASNLVEGQYGSMSSKLIYGVFNTPSNSIPGSAVCAFA
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Known secondary structure (DSSP) SSS
SSS
SS
B


SSS





B

SSTTS




SSS


 .........290.........300.........310.........320.........330.........340.........350
Sequence LQDIADTFEGQFKEQTGINSNWLPVNNAKVPDPRPGSCHNDSRALPDPTLNFIKTHSLMDENVPAFFSQP
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Known secondary structure (DSSP) S
B




SSS





TTTS
SS
SS


S
STTS
STTTTT
BBSS
B

GGGS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ILVRTSTIYRFTQIAVDAQIKTPGGKTYDVIFVGTDHGKIIKSVNAESADSADKVTSVVIEEIDVLTKSE
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Known secondary structure (DSSP) S
SSS

B







TTS




BTT
B




SS




B
S
SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence PIRNLEIVRDGKLIIVTDSQVVAIQLHRCHNDKITSCSECVALQDPYCAWDKIAGKCRSHGAPRWLEENY
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Known secondary structure (DSSP)





SS

S

SSS


S


TT

SSS


SSS


SS


 .........500....
Sequence FYQNVATGQHAACP
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Known secondary structure (DSSP)



SSS



S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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