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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6jdrA_

Fold library idPDB HeaderMoleculeTitle
c6jdrA_2.50PDB header: viral proteinChain: A: PDB Molecule: pp1b;


Added to library: Sat Feb 8 08:26:48 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SRMCGYCGAPAPYATACGLDVCVYHTHFHQHCPVIIWCGHPAGSGSCSECEPPLGKGTSPLDEVLEQVPY
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Known secondary structure (DSSP)

B
TTT
SB
SBTTS

TGGGGS
TTS
BB
TTSSBTT

SSGGG
S




SSGGGS

 .........80.........90.........100.........110.........120.........130.........140
Sequence KPPRTVIMHVEQGLTPLDPGRYQTRRGLVSVRRGIRGNEVDLPDGDYASTALLPTCKEINMVAVASNVLR
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Known secondary structure (DSSP)




SSSB
SS
STTB

SSS
B

S
S

STTTT

T
 .........150.........160.........170.........180.........190.........200.........210
Sequence SRFIIGPPGAGKTHWLLQQVQDGDVIYTPTHQTMLDMIRALGTCRFNVPAGTTLQFPAPSRTGPWVRILA
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Known secondary structure (DSSP)


SSS


TT
SSSS
B



TT

S





SSS
GG
 .........220.........230.........240.........250.........260.........270.........280
Sequence GGWCPGKNSFLDEAAYCNHLDVLRLLSKTTLTCLGDFKQLHPVGFDSHCYVFDIMPQTQLKTIWRFGQNI
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Known secondary structure (DSSP) G




SSTTGGGS
TT






S

SS




GGGGTS

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence CDAIQPDYRDKLMSMVNTTRVTYVEKPVRYGQVLTPYHRDREDSAITIDSSQGATFDVVTLHLPTKDSLN
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Known secondary structure (DSSP) GGG
SSSS


SS



SS
GGG

TT
TTTTTT



STT


 .........360.........370.........380.........390.........400.........410.........420
Sequence RQRALVAITRARHAIFVYDPHRQLQSVFDLPAKGTPVNLAVHRDEQLIVLDRNNREITVAQALGNGDKFR
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Known secondary structure (DSSP) TS
TT

STTT




B

SB
SSS

TT

B

SSS
S

B



 .........430
Sequence ATDKRVVDSL
Predicted secondary structure



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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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