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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6hmsB_

Fold library idPDB HeaderMoleculeTitle
c6hmsB_7.10PDB header: replicationChain: B: PDB Molecule: dna polymerase ii large subunit,dna polymerase ii large


Added to library: Sat Feb 2 09:01:00 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PKEMEEYFEMLQREIDKAYEIAKKARAQGKDPSLDVEIPQATDMAGRVESLVGPPGVAKRIRELVKEYGK
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Known secondary structure (DSSP)
SSSSS
SS
S


B
SS

SSTS
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence EIAALKIVDEIIEGKFGDLGSREKYAEQAVRTALAILTEGIVSAPIEGIANVKIKRNTWADNSEYLALYY
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Known secondary structure (DSSP) T

SS


STT
SSTTTTS


TTTS


 .........150.........160.........170.........180.........190.........200.........210
Sequence AGPIRSSGGTAQALSVLVGDYVRRKLGLDRFKPSEKHIERMVEEVDLYHRAVTRLQYHPSPEEVRLAMRN
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Known secondary structure (DSSP)
STTTTT
TTT






SSSSS

SS


 .........220.........230.........240.........250.........260.........270.........280
Sequence IPIEITGEATDDVEVSHRDVPGVETNQLRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWEWLKEFVEAKE
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Known secondary structure (DSSP)

S

S

S

B
SS
S
SS


SB

TTTTTSSTT
SSTS



 .........290.........300.........310.........320.........330.........340.........350
Sequence DMGFYYSLYQKFKEEIAPSDKYAKEVIGGRSKPGGFRLRYGRSRASGFATWGINPATMILVDEFLAIGTQ
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Known secondary structure (DSSP)


S



S










SSS
SSS
BB
SS



TT
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LKTERPGKGAVVTPVTTIEGPIVKLKDGSVLRVDDYNLALKVREDVEEILYLGDAVIAFGDFVENNQTLL
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Known secondary structure (DSSP) B


SSS





B
SS



TTS


STTGGG



S
STTSS




 .........430.........440.........450.........460.........470.........480.........490
Sequence PANYCEEWWILEFVKALKEIYEVHLEPFTENEEESIEEASDYLEIDPEFLKEMLRDPLRVKPPVELAIHF
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Known secondary structure (DSSP)


S
TTTT




SSS


T


TTT



 .........500.........510.........520.........530.........540.........550.........560
Sequence SEVLGIPLHPYYTLYWNSVEPKDVEKLWRLLKNYAEIEWSNFRGIKFAKKIVISQEKLGDSKRTLELLGL
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Known secondary structure (DSSP) TT




STT


GGGS

SSS


TTTTSSTTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence PHTVRDGNVIVDYPWAAALLTPLGNLNWEFMAKPLYATIDIINENNEIKLRDRGISWIGARMGRPEKAKE
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Known secondary structure (DSSP)

TTB
TTTTTTTTTS




SSS

S




S









S
BGGGS
 .........640.........650.........660.........670.........680.........690.........700
Sequence RKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKVAEVEIAFFKCPKCGHVGPEHLCPNCGTRKELLWVCPRC
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Known secondary structure (DSSP)




S
SB




SSSTTS

T






TTTT
B
SSSB
SSS

B


TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence NAEYPESQAEGYNYTCPKCNVKLRPYAKRKIRPSELLNRAMENVKVYGVDKLKGVMGMTSGWKMPEPLEK
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Known secondary structure (DSSP)


TTB
SSS
SB
BS



TTTT




S


B
S


SSS




S
 .........780.........790.........800.........810.........820.........830.........840
Sequence GLLRAKNDVYVFKDGTIRFDATDAPITHFRPREIGVSVEKLRELGYTHDFEGKPLVSEDQIVELKPQDII
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Known secondary structure (DSSP) T



TTSS




S
B
TTTTT

TTT

B
TTSSB


TT

B


TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence LSKEAGRYLLKVAKFVDDLLEKFYGLPRFYNAEKMEDLIGHLVIGLAPHTSAGIVGRIIGFVDALVGYAH
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Known secondary structure (DSSP) TS



SS


STT

TT
SSSS


 .........920.........930.........940.........950.........960.........970.........980
Sequence PYFHAAKRRNCDGDEDAVMLLLDALLNFSRYYLPEKRGGKMDAPLVITTRLDPRYYPLEFYEATYELKSP
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Known secondary structure (DSSP)
SS

T

STTS
SS


SS












TTTT

S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KELVGVIERVEDMEEKVRRQLEVAKRIRAVDEHGVAEKILNSHLIPDLRGNLRSFTRQEFRCVKCNTKFR
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Known secondary structure (DSSP) S
S





SS
TT
STT

TS




SSS




 .........1060.........1070.........1080.........1090.........1100.
Sequence RPPLNGKCPVCGGKIVLTEKYLGTAKMLVTEYNQRICLTERDIDSLFENVF
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Known secondary structure (DSSP)



S
SSSSSS









STS
STT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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