PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6ep3B_

Fold library id	PDB Header	Molecule	Title
c6ep3B_	2.20	PDB header: transcription	Chain: B: PDB Molecule: lmo0651 protein;

Links to external resources
Added to library: Sat Jul 28 09:14:18 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N K F K T L D K M V Y N L L L E K I K N G E L V P N E H L A E E K L A R E F G V S R S P L R K A I A T L T A Q G I V S Y H E N S G A V L N D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T S S
T T
B
T
T T S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C I V D A D R Y V Q L M E T I E I F V D A A I A K A A H F G Y E M D L E K L Y A R M Q E M E R F S Y L T D L E N Y F D A H H R F I L C L I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F A E N P Y Q V R I V K Q I F F Q M V H F S D G I N M F K S V E I R E W T N K K S N Q I Y E L L A E G K I E L A R K T I K S M F A E L T I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G G G G S T

. . . . . . . .

Sequence A Y R L E H H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	K	F	K	T	L	D	K	M	V	Y	N	L	L	L	E	K	I	K	N	G	E	L	V	P	N	E	H	L	A	E	E	K	L	A	R	E	F	G	V	S	R	S	P	L	R	K	A	I	A	T	L	T	A	Q	G	I	V	S	Y	H	E	N	S	G	A	V	L	N	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S															T	T	S	S		T	T		B											T																T	T	S					T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	I	V	D	A	D	R	Y	V	Q	L	M	E	T	I	E	I	F	V	D	A	A	I	A	K	A	A	H	F	G	Y	E	M	D	L	E	K	L	Y	A	R	M	Q	E	M	E	R	F	S	Y	L	T	D	L	E	N	Y	F	D	A	H	H	R	F	I	L	C	L	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																														T																						T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	A	E	N	P	Y	Q	V	R	I	V	K	Q	I	F	F	Q	M	V	H	F	S	D	G	I	N	M	F	K	S	V	E	I	R	E	W	T	N	K	K	S	N	Q	I	Y	E	L	L	A	E	G	K	I	E	L	A	R	K	T	I	K	S	M	F	A	E	L	T	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																						G	G	G	G	G	G	S																					T
	.	.	.	.	.	.	.	.
Sequence	A	Y	R	L	E	H	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)