Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6c2pB_

Fold library idPDB HeaderMoleculeTitle
c6c2pB_2.70PDB header: transcription/dna/rnaChain: B: PDB Molecule: rnap2;


Added to library: Sat Feb 3 08:21:06 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MQTFTAREYLKIDIANNYGLDKEDWDDRIAWFDKNENNLLNLVREAEEPALFYAGVKAWMDVKEGKPIGY
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)




TTTTTTS
GGGGGGSGGGSSSTT




 .........80.........90.........100.........110.........120.........130.........140
Sequence PVALDATSSGLQILACLTGDRRAAELCNVVNYRDESGKVKRRDAYTVIYNKMLNTLGKGARIKRNDCKQA
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)
BSST
TSS

B
TT

B




TT



 .........150.........160.........170.........180.........190.........200.........210
Sequence IMTALYGSEAKPKEVFGEGIMLNVFESTMNVEAPAVWELNKFWLQCGNPEAFVYHWVMPDGFNVYIKVMV
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) TT
STTS
TT

TT
S
TTS

 .........220.........230.........240.........250.........260.........270.........280
Sequence NEVETVHFLDKPYDCVRKVQGTEEKTRMLSANTTHSIDGLVVRELVRRCDYDKNQIEYIKALCNGEAEYK
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP) SSS



SS
S
S

TT
S


 .........290.........300.........310.........320.........330.........340.........350
Sequence ASEKNYGKAMELWGYYEKTGFLTARIFDYLDSETIKLVNTQDILDLIESMPKKPFHVLTVHDCFRCLPNY
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)

S


GGGGGG

TTGGGGS
TS
SS



SSS
GGG
 .........360.........370.........380.........390.........400....
Sequence GNDIRRQYNNLLATIAKGDLLSFIMSQVIGQEVTIGKLDPTLWEDVLETEYALS
Predicted secondary structure





















SS confidence





















































Known secondary structure (DSSP) S
TS





SSTTTT
S
SB


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D