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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5zu5A_

Fold library idPDB HeaderMoleculeTitle
c5zu5A_1.60PDB header: lyaseChain: A: PDB Molecule: alginate lyase;


Added to library: Sat Jun 30 08:30:51 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DFPNNKETGEALLTPVDATASSHDGNGPDRLIDQDLTTRWSSAGDGEWAMLDYGSVQEFDAVQASFSKGN
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Known secondary structure (DSSP)

TT

SS
S




SS

SS

GGGGSSS
TT

STT
TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence ERQSKFDIQVSVDGETWTTVLENQLSSGKAIGLERFQFEPAVKARYVRYVGHGNTKNGWNSVTGLAAVNC
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Known secondary structure (DSSP) TS
SSSSS


SS
SS
SSSS
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence SINACPASQIITSDVVAAEAVLIAEMKAAEKARKAARKDLRSGNFGVAAVYPCETSVKCDTRSALPVPTG
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Known secondary structure (DSSP) TTS


GGGS

TTTTT



S




T



TTS






 .........220.........230.........240.........250.........260.........270.........280
Sequence LPATPVAGNAPSENFDMTHWYLSQPFDHDKNGKPDDVSEWNLANGYQHPEIFYTADDGGLVFKSYVKGVR
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Known secondary structure (DSSP)

SS

TT

S

TTS

TT
SSS

TTT

BTTT
TTS
S
S

 .........290.........300.........310.........320.........330.........340.........350
Sequence TSKNTKYARTELREMMRRGDQSISTKGVNKNNWVFSSAPEADLEAAAGIDGVLEATLKIDHATTTGNANE
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Known secondary structure (DSSP) SSTT

S

TTTT
TTS
SSSSSTT

TTS
SS



S
TTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VGRFIIGQIHDQNDEPIRLYYRKLPNQPTGAVYFAHESQDATKEDFYPLVGDMTAEVGEDGIALGEVFSY
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Known secondary structure (DSSP) TT
SS

S

TTSSSBTTTTS
TT


TTSSB
TT

 .........430.........440.........450.........460.........470.........480.........490
Sequence RIDVKGNTMTVTLMREGKDDVVQVVDMSNSGYDVGGKYMYFKAGVYNQNISGDLDDYSQATFYQLDVSHD
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Known secondary structure (DSSP) TTTTS


TTSSTTSSS

B

SSS
TT
 ...
Sequence QYK
Predicted secondary structure


SS confidence


Known secondary structure (DSSP)



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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