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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5vljB_

Fold library idPDB HeaderMoleculeTitle
c5vljB_10.50PDB header: motor proteinChain: B: PDB Molecule: nuclear distribution protein pac1;


Added to library: Sat Sep 9 09:58:19 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LKWIPRNLPSCLINVESSVTSVKLHPNLPIVFVATDHGKLYAFDLFNYTIPLASLQSHTKAITSMDVLFT
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Known secondary structure (DSSP)





SS
S
SS

SSSSSSSTT

S

S

SS

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence NYTNSSKKNYLVIVTASKDLQIHVFKWVSEECKFQQIRSLLGHEHIVSAVKIWQKNNDVHIASCSRDQTV
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Known secondary structure (DSSP) S
TTTTS
TTT



S
GGGTT
TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence KIWDFHNGWSLKTFQPHSQWVRSIDVLGDYIISGSHDTTLRLTHWPSGNGLSVGTGHEFPIEKVKFIHFI
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Known secondary structure (DSSP) TTTT


SS
TTTTS
TTT




SS




S
 .........220.........230.........240.........250.........260.........270.........280
Sequence EDSPEIRFRTPSTDRYKNWGMQYCVSASRDRTIKIWEIPLPTLMAHRAPIPNPTDSNFRCVLTLKGHLSW
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Known secondary structure (DSSP) TS
SSSSSGGGTSTT

TTTSSSS



SSSSS
TT
SBS


S

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VRDISIRGQYLFSCADDKSVRCWDLNTGQCLHVWEKLHTGFVNCLDLDVDFDSNVTPRQMMVTGGLDCKS
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Known secondary structure (DSSP)

B
SSTTS
TTTT
TTS
SS




TT
S
TTS
 ....
Sequence NVFM
Predicted secondary structure
SS confidence



Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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