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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5mqfM_

Fold library idPDB HeaderMoleculeTitle
c5mqfM_5.90PDB header: splicingChain: M: PDB Molecule: pre-mrna-splicing factor syf1;


Added to library: Sat Mar 25 09:27:52 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERA
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Known secondary structure (DSSP)




SSSTS
TTTGGGS
STT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRF
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Known secondary structure (DSSP)
S

SSTSS
SSTTSS
SSTTTSS
ST
 .........150.........160.........170.........180.........190.........200.........210
Sequence LKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDA
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Known secondary structure (DSSP) SS

TSS
S
SSSTT

TTTT

SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence IIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKME
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Known secondary structure (DSSP) S


TS
SST

STTTTSS

SSSSST
 .........290.........300.........310.........320.........330.........340.........350
Sequence TASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAV
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Known secondary structure (DSSP) T
S
SSS

STTSSSS

SSTTS

SSSSSTTT
S
SSS
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence QTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEA
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Known secondary structure (DSSP)







SSTTTTTTTTT
SSSS

TTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVI
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Known secondary structure (DSSP)

S
SSSS
SS

S

SSS




TTSS


SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence NYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYA
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Known secondary structure (DSSP) T
SSSSTTTTS
TT
SSS



SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence KTLYLLYAQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDE
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Known secondary structure (DSSP)

SSTTT
TTSS
TT

SS
S
SSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence HAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKEMLRIRRSVQA
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Known secondary structure (DSSP) S
SSS

SS

TTT
TTTTS
 ......
Sequence TYNTQV
Predicted secondary structure


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Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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