Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5m99A_

Fold library idPDB HeaderMoleculeTitle
c5m99A_1.96PDB header: hydrolaseChain: A: PDB Molecule: alpha-amylase;


Added to library: Sat Jul 22 08:45:47 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NEVKYPVVYEIFIRSLYDSDGDGVGDINGVSQKVDYLRKLGIDAVWFMPFNEAVSYHGYDITDYYNVEKD
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP)


SS


GGGT

SSSSS


TT
SS

SSTTS
S
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence YGTMEDLENMIQVLHENGIKVIMDLVINHTSDEHPWFKDAVENTTSSPYWDYYIMSLEDHSGQDHWHWKI
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) T

TT


SB

TTSGGGSTTGGGB
SS

TT
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NSKGQKVWYFGLFGYNMPDLNHDSQKVREEVKKIVDFWISKGVDGFRIDAAKHIYGWSWDDGIQESAEYF
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)
TT


TT
TTS
BB
TTSTT

TTTT
SS
SSTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence EWFRDYVLSKKPDAILVGEVFSGNTYDLSLYPIPVFNFALMYSIRNYPEGQDGMIENNWVEESFLFLENH
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)
TT






T
SS
BB

TT

TTT

TT
BS

T
 .........290.........300.........310.........320.........330.........340.........350
Sequence DLHRFFSHLQEHYKKFSESDYEFIKKRAALWYFLIFTLKGSPVIYYGGEIGTRGFKWHGPVYDEPVREPM
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP) TS

T

SGGGSSS
TTGGGT





SSS

SGGGS


 .........360.........370.........380.........390.........400.........410.........420
Sequence QWYASGTGEGQTFWTKEVYKNAGITFGNADVDGCIYDDPYDGFSVEEQENDPKSLLNFIRFILNFRKDHD
Predicted secondary structure













































SS confidence





































































Known secondary structure (DSSP)

STTS

TT


TT

GGGS
SS

TTSS
STT
TTSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence AILNGDQTIFRDWKNLIAFYRESSNEKLLVVLNPDPVWQNSFTFEENMTMILEVDFENFIWNESNVSFSA
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)
TTTT

SS


SS
TTTT



T
 .........500......
Sequence GESFTVDPMKAYIFKK
Predicted secondary structure





SS confidence















Known secondary structure (DSSP) T

TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D