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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5lc5O_

Fold library idPDB HeaderMoleculeTitle
c5lc5O_4.35PDB header: oxidoreductaseChain: O: PDB Molecule: nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit


Added to library: Thu Feb 9 14:10:29 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)

STTTT

TTTT
STT






SS
SGGGGT
S




TTSTTTSSS
SS


TTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence XXXXXXXXXXXXXXXXGNSYRLQAWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFI
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Known secondary structure (DSSP) SSS

T

SSSS
TTSS


S
GGGSSTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence RKQCVDHYNQVKKVTICEYLPPHVVVYVDVPVPEVQSRIQKKGNPHEMKITSAYLQDIENAYKGTFLPEM
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Known secondary structure (DSSP)

S


S


TTTSS
TTTSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence SEKCEVLQYSAWEAQDAEKVVEDIEYLKYDKGPWLDQNDRNLHKLRMLVQDKLEVLNYTSIPVFLPEVTV
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Known secondary structure (DSSP) TT

SSSTT




S
TT


TTT
S




TTS

 .........290.........300.........310....
Sequence GAHQSDQVFQEFTELPGRKYRAGYNEDVGDKWIW
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Known secondary structure (DSSP)
S
SSSTT
SS

TTTT





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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