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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5khrA_

Fold library idPDB HeaderMoleculeTitle
c5khrA_6.10PDB header: cell cycleChain: A: PDB Molecule: anaphase-promoting complex subunit 1;


Added to library: Thu Feb 9 16:06:22 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MIAARDLQEFVPFGRDHCKHHPKESWQLRKGVSEIGEDVDYDEELYVAGNMVIWSKGSKSQALAVYKAFT
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Known secondary structure (DSSP)

B
S




TTS







SS
TT




SS

STTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VDSPVQQALWCDFIISEVEKCICILQSSCINMHSIEGKDYIASLPFQVANVWPTKYGLLFERSPLPTMFS
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Known secondary structure (DSSP)
SS

S


SSS

SSBTTS

SS

S


SSS


SS

B
 .........150.........160.........170.........180.........190.........200.........210
Sequence MLHPLDEITPLVCKQYVVDHAMKIVFLNTDPSIVMTYDAVQNVHSVWTLRRVKSEEENVPIVPELCIDHL
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Known secondary structure (DSSP)
SSTTS

B

B
SSB


TTS





SSS



BTTTTB




S




TT




 .........220.........230.........240.........250.........260.........270.........280
Sequence WTSQASKVFITSDLCGQKFLCFLVESQLQLRCVKFQESTQLIFGSVTNIPAKDAAPVEKIDTMLVLEGSG
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Known secondary structure (DSSP)




S


SSS



TTT

SSS
S
SSS


SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence NLVLYTGVVRVGKVFIPGTYIHSIRDPVHNRVTLELSNGSMVRITIPEIATSELVQTCLQAIKFILPKEI
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Known secondary structure (DSSP)
SSSSB



B
S




TT
TTS



S
SSS
TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence AVQMLVKWYNVHSAPGGPSYHSEWNLFVTCLMNMMGYNTHIPAIFFVLHLVYEELKLNTLMGEGICSLVE
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Known secondary structure (DSSP)

STT

S
SSS


STSTT
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LLVQLARDLKLGPYVDHYYRDYPTLVFTSEPPSIYQWVSSCLKGEGMPPYPYLPGICERSRLVVLSIALY
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Known secondary structure (DSSP) TTSSTTTT
TSSS



SS


SS







TTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence ILSSLAERLVVWMTNVGFTLRDLETLPFGIALPIRDAIYHCREQPASDWPEAVCLLIGRQDLSKQDDGMN
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Known secondary structure (DSSP) T
STTT

TTS



S


SS








SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence DMNHEVMSLIWSEDLRVQDVRRLLQSAHPVRVNVVQYPELSDHEFIEEKENRLLQLCQRTMALPVGRGMF
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Known secondary structure (DSSP)
S
S
SS
T

SS






TT

 .........640.........650.........660.........670.........680.........690.........700
Sequence TLFSYHPVPTEPLPIPKLNLTGRAPPRNTTVDLNSGNIDVPPNMTSWASFHNGVAAGLKIAPASQIDSAW
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Known secondary structure (DSSP) T
S
B


TTS










SSS


STTTSS


TT
STB
TTS


 .........710.........720.........730.........740.........750.........760.........770
Sequence IVYNKPKHAELANEYAGFLMALGLNGHLTKLATLNIHDYLTKGHEMTSIGLLLGVSAAKLGTMDMSITRL
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Known secondary structure (DSSP) T

TTSTTTTGGGGS
STTTTS

TSSS

 .........780.........790.........800.........810.........820.........830.........840
Sequence LSIHIPALLPPTSTELDVPHNVQVAAVVGIGLVYQGTAHRHTAEVLLAEIGRPPGPEMEYCTDRESYSLA
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Known secondary structure (DSSP) TTSSSS

SS






TSSS

TS

S
SSSSS
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence AGLALGMVCLGHGSNLIGMSDLNVPEQLYQYMVGGHEGDTINVDVTCPGATLALAMIYLKTNNRSIADWL
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Known secondary structure (DSSP) SSS

SS
TTGGGS



SSSS

TTTT

S
 .........920.........930.........940.........950.........960.........970.........980
Sequence RAPDTMYLLDFVKPEFLLLRTLARCLILWDDILPNSKWVDSNVPQIIRENLNLETLSQAHVYIIAGACLS
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Known secondary structure (DSSP) S


STS
SSSTTT


STS
TT
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LGFRFAGSENLSAFNCLHKFAKDFMTYLSAPNASVTGPHNLETCLSVVLLSLAMVMAGSGNLKVLQLCRF
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Known secondary structure (DSSP) SSSS

TSTT
T
SS

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LHMKTGGEMNYGFHLAHHMALGLLFLGGGRYSLSTSNSSIAALLCALYPHFPAHSTDNRYHLQALRHLYV
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Known secondary structure (DSSP)
SSS

TGGGGT


SS
S


SSTT

TTS
GGGGGG
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LAAEPRLLVPVDVDTNTPCYALLEVTYKGTQWYEQTKEELMAPTLLPELHLLKQIKVKGPRYWELLIDLT
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Known secondary structure (DSSP)
TTTT




SSSS

SS
S
GGG
SSS


S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence QHLKSILSKDGVLYVKLRAGQLSNSEARAFKSAFTSDPALLSFAEYFCKPTVNMGQKQEILDLFSSVLYE
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Known secondary structure (DSSP) STTT


SSTT


S




S
S


TTT


SS
SST
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence CVTQETPEMLPAYIAMDQAIRRLGRREMSETSELWQIKLVLEFFSSRSHQFMNSEFLPVVKCTIDNTLDQ
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Known secondary structure (DSSP) SS
STT



TSSS
S




T
 .........1340.........1350.........1360.........1370.........1380.........1390.
Sequence WLQVGGDMCVHAYLSLEESQLSMLACFLVYHSVPAPSFAELLFKFKQLKMPVRALLRLAPL
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Known secondary structure (DSSP) TTTTSS

SST
SS

SS



STTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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