PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5kdiA_

Fold library id	PDB Header	Molecule	Title
c5kdiA_	1.45	PDB header: lipid transport	Chain: A: PDB Molecule: pleckstrin homology domain-containing family a member 8;

Links to external resources
Added to library: Sat Dec 16 08:23:55 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P T F F S T M N T S F S D I E L L E D S G I P T E A F L A S C Y A V V P V L D K L G P T V F A P V K M D L V G N I K K V N Q K Y I T N K A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B G G G S T T T
G G G
B G G G B
B T T
T T T T T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F T T L Q K I V L H E V E A D V A Q V R N S A T E A L L W L K R G L K F L K G F L T E V K N G E K D I Q T A L N N A Y G K T L R Q H H G W V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B T T
T T S T T
T T
T G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V R G V F A L A L R A A P S Y E D F V A A L T V K E G D H Q K E A F S I G M Q R D L S L Y L P A M E K Q L A I L D T L Y E V H G L E S D E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T B S S T T G G G S T T

.

Sequence V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	T	F	F	S	T	M	N	T	S	F	S	D	I	E	L	L	E	D	S	G	I	P	T	E	A	F	L	A	S	C	Y	A	V	V	P	V	L	D	K	L	G	P	T	V	F	A	P	V	K	M	D	L	V	G	N	I	K	K	V	N	Q	K	Y	I	T	N	K	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B	G	G	G	S	T	T	T		G	G	G				B	G	G	G	B		B										T	T									T	T	T	T																			T	T		T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	T	T	L	Q	K	I	V	L	H	E	V	E	A	D	V	A	Q	V	R	N	S	A	T	E	A	L	L	W	L	K	R	G	L	K	F	L	K	G	F	L	T	E	V	K	N	G	E	K	D	I	Q	T	A	L	N	N	A	Y	G	K	T	L	R	Q	H	H	G	W	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	B											T	T		T	T	S	T	T																									T	T															T	G	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	R	G	V	F	A	L	A	L	R	A	A	P	S	Y	E	D	F	V	A	A	L	T	V	K	E	G	D	H	Q	K	E	A	F	S	I	G	M	Q	R	D	L	S	L	Y	L	P	A	M	E	K	Q	L	A	I	L	D	T	L	Y	E	V	H	G	L	E	S	D	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T										T	T	B	S	S	T	T	G	G	G	S																																T	T
	.
Sequence	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)