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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c4xc8B_

Fold library idPDB HeaderMoleculeTitle
c4xc8B_PDB header: isomeraseChain: B: PDB Molecule: methylmalonyl-coa mutase;PDBTitle: isobutyryl-coa mutase fused with bound butyryl-coa, gdp, and mg and2 without cobalamin (apo-icmf/gdp)


Added to library: Sat Feb 14 08:32:42 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GPANKVRFVTAASLFDGHDASINIMRRILQSQGCEVIHLGHNRSVQEVVTAALQEDVQGIAISSYQGGHV
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Known secondary structure (DSSP)

SS


TT



TT


SS

T
S

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EYFKYMIDLLREHGGEHIQVFGGGGGVIVPDEIRELQAYGVARIYSPEDGQRMGLAGMITDMAQRCDIDL
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Known secondary structure (DSSP) TT
TTS
TTSS
T
S


T



 .........150.........160.........170.........180.........190.........200.........210
Sequence TRYAPTTLDTVVAGDRRALAQLITALENGKADPELVSALHAQAKAAAVPVLGITGTGGAGKSSLTDELIR
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Known secondary structure (DSSP) TTSS
SSTT
T
S



STTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence RFRLDQDDALSIAVISIDPSRRKSGGALLGDRIRMNAINHPNIFMRSLATREAGSEISQALPDVIAACKA
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Known secondary structure (DSSP) TT





TTTS


SGGG
SS

STT

SSS
SS
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence ARFDLVIVETSGIGQGDAAIVPHVDLSLYVMTPEFGAASQLEKIDMLDFADFVAINKFDRKGAQDAWRDV
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Known secondary structure (DSSP) TT
S

SS


SGGG
S
S

SSGGGGGT
GGGGT
S

TTSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence AKQVQRNREQWHSRAEDMPVYGTQASRFNDDGVTMLYQGLVGALGARGMSLKPGTLPNLEGRISTGQNVI
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Known secondary structure (DSSP) TT
TTS
GGGSS

TTSTT
TTT





SS




SB


TT
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence VPPARSRYLAELADTVRAYHRRVVAQSKLARERQQLRAAHDMLQGAGHESAALETLASERDVSLGAVERK
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Known secondary structure (DSSP) S
GGGTTTTS


TS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LLAMWPQMQQAYSGDEYVVIRTGLISTTLSGTKIRKVVLPRFEDEGEILKWLMRENVPGSFPYTAGVFAF
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Known secondary structure (DSSP) TTSSB





B

SS

SS






S
STTSTT
TT
SSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence KREGEDPTRMFAGEGDAFRTNRRFKLVSEGMEAKRLSTAFDSVTLYGEDPHERPDIYGKVGNSGVSIATL
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Known secondary structure (DSSP)


S






BSTSS
S
B
TT



SSTTTTTTSB


S
 .........640.........650.........660.........670.........680.........690.........700
Sequence EDMKVLYDGFDLTNPSTSVSMTINGPAPTILAMFMNTAIDQQIDRFRADNGRDPTADEEAKIRAWVLQNV
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Known secondary structure (DSSP) TTTS
TTSTT

TTSSS



 .........710.........720.........730.........740.........750.........760.........770
Sequence RGTVQADILKEDQGQNTCIFSTEFSLKVMGDIQEYFVHHQVRNFYSVSISGYHIAEAGANPISQLAFTLA
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Known secondary structure (DSSP)



TT


SB
TT

S

TT

 .........780.........790.........800.........810.........820.........830.........840
Sequence NGFTYVEAYLARGMHIDDFAPNLSFFFSNGMDPEYSVLGRVARRIWAVTMRDKYGANDRSQKLKYHIQTS
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Known secondary structure (DSSP) TT

GGG

SSGGGGGTS






 .........850.........860.........870.........880.........890.........900.........910
Sequence GRSLHAQEIDFNDIRTTLQALIAIYDNCNSLHTNAYDEAITTPTAESVRRALAIQLIINREWGVAKCENP
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Known secondary structure (DSSP) STT

SSSGGGTT
S


TTTTSS


TTT
SGGGSS
T
 .........920.........930.........940.........950.........960.........970.........980
Sequence NQGSFLIEELTDLVEEAVLQEFERIAERGGVLGAMETGYQRGKIQEESLYYEQLKHDGTLPIIGVNTFRN
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Known secondary structure (DSSP) TTT
TTTTTTSS

BTTTBS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PNGDPLARSSEDEKQSQLHRLTEFHGAHQADAEAMLARLRQAVIDNRNVFAVLMDAVRVCSLGQITHALF
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Known secondary structure (DSSP) TT





S
TTTTT

TTTS
 .........1060
Sequence EVGGQYRRNM
Predicted secondary structure


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Known secondary structure (DSSP) TTTB





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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