PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c4dkkA_

Fold library id	PDB Header	Molecule	Title
c4dkkA_	PDB header: rna binding protein	Chain: A: PDB Molecule: double-stranded rna-binding protein staufen homolog 1;	PDBTitle: the x-ray crystal structure of the human stau1 ssm-'rbd'5 domain-2 swapped dimer

Links to external resources
Added to library: Sat Mar 23 08:20:17 2013

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G S K A T V T A M I A R E L L Y G G T S P T A E T I L K N N I S G P L T R P S E Q L D Y L S R V Q G F Q V E Y K D F P K N N K N E F V S L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . .

Sequence N C S S Q P P L I S H G I G K D V E S C H D M A A L N I L K L L S E L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	S	K	A	T	V	T	A	M	I	A	R	E	L	L	Y	G	G	T	S	P	T	A	E	T	I	L	K	N	N	I	S	G	P	L	T	R	P	S	E	Q	L	D	Y	L	S	R	V	Q	G	F	Q	V	E	Y	K	D	F	P	K	N	N	K	N	E	F	V	S	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S												S							S																									T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Sequence	N	C	S	S	Q	P	P	L	I	S	H	G	I	G	K	D	V	E	S	C	H	D	M	A	A	L	N	I	L	K	L	L	S	E	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S									S	S																	T	T