HHsearch 1.5 NAME c4dkkA_ FAM FILE c4dkkA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4dkkA_.a3m DATE Sat Mar 23 08:20:17 2013 LENG 106 match states, 106 columns in multiple alignment FILT 32 out of 36 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.4306 0.3909 SEQ >ss_dssp CCHHHHHHHHHHHHHHHSCCHHHHHHHCCSCCCCCCSHHHHHHHHHHHHCCCEEEEEECCCTTSCEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHH HHTTCC >sa_dssp EEEEECEDDCCECEEEDEDBDCBEEDEEDEEEEEEEEBBCDAEDDBEEEDCECECEDDEDDEEECCDADADACDEEDCECDAEBEDDCCABCDAADDACD EDDEEE >ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHH HHHHCC >ss_conf 9876440699999851276765577741556778888899999999971986898550148877279999951899868961578989999999798999 876309 >Consensus xsxxtxsxxxaxexlxxxtsptaxxlxxxsxxxpxxxpxxqLxxLaxxxgFxVxyxDfxkxxxxeyxtlVxLstxPpxVchGsGxsxexsxxxAAxnALx xLxxmx >c4dkkA_ GSKATVTAMIARELLYGGTSPTAETILKNNISGPLTRPSEQLDYLSRVQGFQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILK LLSELD >UniRef50_Q172A2(890-1001:1103) Staufen n=3 Tax=Neoptera RepID=Q172A2_AEDAE E=2e-33 s/c=1.28 id=33% cov=100% SSNATISPTAVNSSSTSNVAPStaqtpapAPTTLKSSSIADVGPMKKQLMYLAQLLKFEVMFSDFPKGNHGEYLTLVTLSTEPPQLCHGSGASLEESHDE AARGALEILSKI- >UniRef50_Q4SMW1(489-594:687) Chromosome 6 SCAF14544, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4SMW1_TETNG E=1e-26 s/c=1.14 id=36% cov=94% ASSPSPTATMARELLLNGQSPTIDASLAMKGANPglacgvSVQPAQQLDYLARIQGFQVQYND--AQSGKDYVTYLTLSPV-QMTFHGTGSTLQASHDQK SSTPFEAL---- >UniRef50_A7SHZ6(77-174:292) Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7SHZ6_NEMVE E=7e-17 s/c=0.90 id=37% cov=76% ----------------GVTTPGPDKVIGNSF--------ESLMSLAEKHGLVVKFTDYPKDNKGtpEFLSVCNVSCVPPITCYGSGKTIEESREEASANA LNPLLE-- >UniRef50_UPI0001925261(395-483:493) PREDICTED: similar to neuron-specific staufen n=1 Tax=Hydra magnipapillata RepID=UPI0001925261 E=1e-16 s/c=0.98 id=34% cov=61% --------------------------------------KQKLEYIAQLEGFQLMFNDFVKNkkdNRGEFSSNLSIFTTPPEVYQGSGDSVEASRENASSK ALKAM---- >UniRef50_Q94239(637-701:705) Putative uncharacterized protein n=3 Tax=Caenorhabditis RepID=Q94239_CAEEL E=7e-07 s/c=0.84 id=28% cov=61% -----------------------------------------LEQLSDFFKFSLQYTSFPQVGIDQHFTIVSIGLEAPLVGHGTGCSTTEADENAALDAIA KLKEL- >UniRef50_Q3L1C9(831-916:950) Neuron-specific staufen n=1 Tax=Aplysia californica RepID=Q3L1C9_APLCA E=8e-17 s/c=1.02 id=38% cov=70% -----------------------------SILKPNLRPEIQLRELCKAMDCQLEIDDFTKKrtSGTEHITRITIGSENPQSFHGSNTSLESSRDMAALDA LKVL---- >UniRef50_D2A048(362-443:480) Putative uncharacterized protein GLEAN_08157 n=2 Tax=Tribolium castaneum RepID=D2A048_TRICA E=2e-16 s/c=1.06 id=28% cov=65% ---------------------------------PYASPKTKLLEIGNKLNINVEFTDLIKQD-NQYYTLVSLGLKPPHVCLGKAAVQAKSHEDAALRGLQ LL---- >UniRef50_B0V3F8(177-276:282) Interferon-inducible double stranded RNA-dependent protein kinase activator A homolog n=15 Tax=Euteleostomi RepID=PRKRA_DANRE E=7e-16 s/c=0.85 id=28% cov=84% ------------ESLRNSTGEKVSLLKRTPLSLPNTDYIQMLLEISLELGFQVTYIDIDELTvNGQYQCLVELSTRPVTVCHGSGVTSSNAHNAAAHNAL Q------ >UniRef50_B7QGM0(179-270:273) Tar RNA-binding protein, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7QGM0_IXOSC E=1e-10 s/c=0.73 id=24% cov=36% --------------------------------------------------------------------LVQLTSLPLAVCFGTAESPEQARAAAARSALQ YLKIM- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 1628 * * * * 1617 * * * * * * * * * 1513 * * * * 1 0 * * * * * * 2000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 2000 0 0 K 3 * * * * * * * * 1617 * * 1513 * * * 1628 * * * * 3 0 * * * * * * 2000 0 0 A 4 564 * * * * * * * * * * * 1628 * * * * * * * 4 0 * * * * * * 2000 0 0 T 5 * * * * * * * * * * * * * * * 2051 398 * * * 5 0 * * * * * * 2131 0 0 V 6 * * * * * * * 1623 * * * * 2051 * * 2300 * 2115 * * 6 0 * * * * * * 2131 0 0 T 7 * * * * * * * * * * * * * * * 685 1403 * * * 7 0 * * * * * * 2416 0 0 A 8 651 * * * * * * * * * * * 2108 * * 2931 * * * * 8 0 * * * * * * 2416 0 0 M 9 2931 * * * * * * * * * 3044 * 3497 * * * 601 * * * 9 0 * * * * * * 2416 0 0 I 10 1641 * * * * * * 852 * * 2994 * * * * * * * * * 10 0 * * * * * * 2416 0 0 A 11 381 * * * * * * * * * * * * * * * * 2108 * * 11 0 * * * * * * 2416 0 0 R 12 * * * * * * * * 1929 * * 2108 * * 984 * * * * * 12 0 * * * * * * 2416 0 0 E 13 * * * 302 * * * * * * * * * * * 2406 * * * * 13 0 * * * * * * 2865 0 0 L 14 * * * * * * * * * 703 * * * * * 1374 * * * * 14 0 * * * * * * 2865 0 0 L 15 * * * * * * * * * 302 * * * * * 2406 * * * * 15 0 * * * * * * 2865 0 0 Y 16 * * 3363 * * * * * 3130 3297 2272 * * * 2343 * 2406 * * 3411 16 0 * * * * * * 2865 0 0 G 17 * * * * * 1719 * * * * * 1174 * 3548 * 2577 * * * * 17 0 * * * * * * 3133 0 0 G 18 * * * * * 893 * * * * * 2577 * * * 2537 * 3040 * * 18 0 * * * * * * 3133 0 0 T 19 * * * * * * * 3308 * * * * * 3467 * * 848 1982 * * 19 0 * * * * * * 3133 0 0 S 20 2577 * * * * 2537 * * * * * * * * * 893 3040 * * * 20 0 * * * * * * 3133 0 0 P 21 * * * 2537 * * * * * * * * 503 * * 3032 * * * * 21 0 * * * * * * 3133 0 0 T 22 4103 * * * * 3040 * * 2537 * * * * * * 2577 1058 * * * 22 265 2577 * 2807 222 * * 3133 1000 0 A 23 700 * * * * * * 3467 * * * * 3040 * * * * 2537 * * 23 0 * * * * * * 3133 0 0 E 24 * * 1676 1527 * * * * * * * * 2577 * * 2537 * * * * 24 0 * * * * * * 3133 0 0 T 25 1128 * * * * * * * 3040 2537 * * * * * * 2008 * * * 25 0 * * * * * * 3133 0 0 I 26 * * * * * * * 2190 * 1052 * * * * * 3733 3151 3177 * * 26 233 3423 4158 0 * * * 3492 1061 0 L 27 * * * * * * * 3153 2030 1363 * * * * 2625 * * 3445 * * 27 0 * * * * 0 * 3463 0 1000 K 28 3733 * * * * 1970 * * 1858 * * * * 2684 2658 3649 * * * * 28 100 3905 * 0 * * * 3492 1000 0 N 29 3905 * * * * 3423 * * 3491 4158 3733 1893 * * * 2350 2694 * * * 29 0 * * * * * * 3492 0 0 N 30 * * * * * * * * 3072 3714 * 4091 2263 * * 895 * * * * 30 0 * * * * * * 3748 0 0 I 31 * * * * 3363 3072 * 2601 * 1492 * * * * * 2442 3651 * * * 31 148 * 3363 * * * * 3748 0 0 S 32 3751 * * * * * * 3162 * 3063 * * 3452 * * 1158 3916 3499 * * 32 0 * * * * * 0 3512 0 1000 G 33 2311 * * * * 3927 * 3560 3063 3770 * 3751 * * * 4161 2556 2692 * * 33 0 * * * * * 0 3512 0 1000 P 34 4169 * 3256 * * * * * * 3565 * * 551 * * * 3784 * * * 34 149 3351 * 2328 321 * 0 3654 1281 1000 L 35 * * * * * * 3565 * * 4021 * 1630 2875 * * 2941 4337 3256 * 3182 35 136 3477 * 1973 424 * 0 3654 1180 1000 T 36 3182 * * * * 3256 * * * 3035 * * * * * 2833 1840 2039 * * 36 109 3784 * 4644 59 * 0 3654 1000 1000 R 37 * * 2303 * * * * * * * * 3789 3715 2195 1664 3121 * * * * 37 0 * * * * * 0 3452 0 1000 P 38 * * * * * * * * * * 3814 * 750 * * 3891 * * * 1905 38 0 * * * * * 0 3448 0 1000 S 39 4837 4098 * 3155 * * * 2444 1284 * * * * * * 3106 3574 * * * 39 0 * * * * 0 * 3378 0 1000 E 40 * * 3395 2428 * * * 3348 2466 * * * * 1479 * * 3626 * * * 40 0 * * * * * * 3791 0 0 Q 41 * * * * * * * * 2747 3444 2526 * * 1036 * 3355 * * * * 41 0 * * * * * * 3791 0 0 L 42 * * * * * * * * * 91 4032 * * * * * * * * * 42 0 * * * * * * 3987 0 0 D 43 * * 3202 2611 * * 3908 * 5084 1858 2709 * * 4845 3482 3672 * * * * 43 0 * * * * * * 3987 0 0 Y 44 * * 3908 1394 * * * * * * * * * 3867 * 3435 * * * 1351 44 0 * * * * * * 3987 0 0 L 45 * * * * 3859 * * 2089 * 523 * * * * * * * * * * 45 0 * * * * * * 3925 0 0 S 46 1096 3490 * * * 3760 * * * * * * * * * 1436 * * * * 46 0 * * * * * * 3925 0 0 R 47 * * 3307 2242 * * * * 2131 4918 * 3760 * 2380 3355 * 4000 * * * 47 0 * * * * * * 3925 0 0 V 48 3490 * * 1764 3665 * * 3755 2655 2387 3859 * * * * * * 4485 * * 48 0 * * * * * * 3925 0 0 Q 49 * * * 4828 3665 * 3556 * * 1747 2798 * * 1477 * * * * * * 49 0 * * * * * * 3925 0 0 G 50 4413 * 3130 * * 1136 * * 3256 * * 2419 * * 3439 * * * * * 50 0 * * * * * * 3925 0 0 F 51 * 3490 * * 478 * * 3212 * 3556 * * * * * * * * * * 51 0 * * * * * * 3926 0 0 Q 52 * * * 1973 * 5074 4415 * 3860 * * 3263 * 1591 * 3666 * 3556 * * 52 0 * * * * * * 3926 0 0 V 53 * * * * * * * 4745 * 2227 * * * * * * * 417 * * 53 0 * * * * * * 3761 0 0 E 54 * * 4955 2195 * * 3930 * 3985 * 3507 5137 * 2017 * 3803 2430 * * * 54 0 * * * * * * 3761 0 0 Y 55 * * * * 1317 * * 3764 * * * * * * * * * * * 929 55 0 * * * * * * 3761 0 0 K 56 * * 3764 * 4330 * * 5103 4388 2801 * 2995 * * * 2159 2074 3849 * * 56 0 * * * * * * 3761 0 0 D 57 * * 271 4525 * * * * * * * 4330 * * * 3674 * * * * 57 95 * 3968 * * * * 3761 0 0 F 58 * * * * 1014 * * 1714 * 3931 * * * * * * * * * 2896 58 0 * * * * * 0 3662 0 1000 P 59 * * 2623 2811 * * * 3931 * * * * 1051 * * * 3667 3877 * * 59 0 * * * * 0 * 3662 0 1000 K 60 3968 * * 1777 * * * * 821 * * * * 3674 * * * * * * 60 0 * * * * * * 3761 0 0 N 61 4960 * 3985 * * 2150 * * 2806 2836 * 3193 4330 2984 4943 * * 3674 * * 61 210 2887 * 1280 766 * * 3761 1616 0 N 62 * * 4000 * * 3674 * * * * * 1319 * * * 1832 2495 * * * 62 479 2185 4000 0 * * * 3761 1756 0 K 63 3703 * * * * 2790 2251 3581 2697 * * 3591 * * 3947 2719 * * * 5006 63 0 * * * * 0 * 3642 0 1000 N 64 * * 3674 4960 * 1430 * * 3425 * * 1990 * * 4901 3907 3764 * * * 64 153 3316 * 735 1326 * * 3761 1565 0 E 65 * * 2835 1252 * * * * * 3808 3779 * * 2116 4938 4954 * * * * 65 47 4954 * 0 * * * 3839 1000 0 F 66 * 4714 * * 1496 * 2467 * * * * * * * * * * * * 1230 66 0 * * * * * * 3839 0 0 V 67 * * * * 3740 * 4920 3762 * 1682 * * * 1888 * 4021 * 3165 * 3976 67 0 * * * * * * 3839 0 0 S 68 * 1722 * * * * * * * * * * * * * 1770 1309 * * * 68 0 * * * * * * 3839 0 0 L 69 * * * * * * * 3135 * 660 * 3971 * * 4066 * * 4137 * 3779 69 0 * * * * * * 3753 0 0 I 70 4117 4180 * * * * * 3170 * 2631 * * * * * * * 702 * * 70 0 * * * * * * 3854 0 0 N 71 * * * 2643 * * * * * * 5210 3205 * 2603 4004 2026 2108 * * * 71 0 * * * * * * 3854 0 0 C 72 * 4231 * * * * * 2301 * 681 5003 * * * * * * 3491 * * 72 0 * * * * * * 3854 0 0 S 73 * * * * 4040 2608 * * * * * * * 4004 * 674 3541 * * * 73 0 * * * * * * 3854 0 0 S 74 * 4180 * * * * * * * 3236 * * 3903 * * 2794 672 * * * 74 0 * * * * * * 3854 0 0 Q 75 4004 5050 4193 2856 * * 5448 * 4354 3310 4991 3444 * 2652 5701 4117 4040 3035 * * 75 100 * 3903 * * * * 3854 0 0 P 76 4054 * * * * * * * * * * 3997 189 * * * * * * * 76 0 * * * * 0 * 3704 0 1000 P 77 5326 * * * * * * 4413 * 4951 * * 843 3911 * 5039 * 2051 * * 77 0 * * * * * * 3856 0 0 L 78 3142 4908 * 4054 * 5258 3678 4202 * 3203 3911 * * 2089 * * 2520 4316 * * 78 0 * * * * * * 3856 0 0 I 79 * * * * * * * 2923 * 5472 * * * * * 4119 3049 584 * * 79 0 * * * * * * 3856 0 0 S 80 * 634 * * 3011 4151 * * * 4908 * * * * * 3610 * * * 4054 80 0 * * * * * * 3856 0 0 H 81 * * * * 3408 * 617 * 5025 4389 * * * 4054 * * * * * 3120 81 0 * * * * * * 3856 0 0 G 82 4014 * * * * 92 * * * * * * * * * * * * * * 82 0 * * * * * * 3856 0 0 I 83 4025 * * 5441 5415 * 5459 3066 4389 * * 4014 * 5505 4908 1367 2514 5479 * * 83 0 * * * * * * 3856 0 0 G 84 2961 * * * * 297 * * * * * 4119 * * * * * * * * 84 0 * * * * * * 3856 0 0 K 85 2869 4151 4054 4951 * * 5505 3380 2623 3438 * 5765 3798 * * 2735 3600 5750 * * 85 0 * * * * * * 3856 0 0 D 86 * * 4257 * * * * * * * * 4430 * * * 927 1610 4389 * * 86 0 * * * * * * 3856 0 0 V 87 3780 4176 4619 5765 * * * 3561 5459 1923 * * 4951 4389 3200 4608 3657 2916 * * 87 0 * * * * * * 3856 0 0 E 88 3759 * 4459 1124 * 5410 * * 3627 * * 3393 * 3429 * 3773 4151 * * * 88 0 * * * * * * 3856 0 0 S 89 1895 * 2958 1864 * * * * 4389 * * 3256 * 3929 * 3186 * * * * 89 0 * * * * * * 3856 0 0 C 90 1251 4257 * * * * * * * * * * * * * 923 * * * * 90 0 * * * * * * 3856 0 0 H 91 * * 4151 * * * 1451 * 4619 * 4014 * * 2564 1707 * * * * * 91 0 * * * * * * 3856 0 0 D 92 3351 * 1828 1522 * 5326 * * * 4619 * 3272 * * 5258 3702 * * * * 92 0 * * * * * * 3856 0 0 M 93 2702 * 2541 2928 * * 4376 * 5441 * 3186 2670 * 3064 * 5415 4014 * * * 93 0 * * * * * * 3856 0 0 A 94 198 * * * * * * * 3911 * * * * * * 4014 * * * * 94 0 * * * * * * 3856 0 0 A 95 288 * * * * * * * * * * * * * * 2466 * * * * 95 0 * * * * * * 3856 0 0 L 96 4202 * * * 4619 * 2313 * * 1513 * * * 5258 2788 2746 * 4908 * * 96 0 * * * * * * 3856 0 0 N 97 5077 * 3135 5441 * 5472 4619 * 4054 * * 1140 * * 3783 3962 3064 * * * 97 0 * * * * * * 3856 0 0 I 98 352 * * * * 4389 * 4257 * * * * 3911 * * 5626 * 5077 * * 98 0 * * * * * * 3856 0 0 L 99 * 4619 * * 3911 * * 3523 * 311 * * * * * * * * * * 99 0 * * * * * * 3856 0 0 K 100 4151 * * 2124 * * * * 2048 5765 * 4202 * 1805 4256 5025 5039 * * * 100 0 * * * * * * 3856 0 0 L 101 2660 * * * * * * 3759 4141 3063 * * 4193 * * 4968 4218 3621 * 1435 101 0 * * * * * * 3858 0 0 L 102 * * * * * * * 4882 * 143 4043 * * * * * * * * * 102 0 * * * * * * 3858 0 0 S 103 4528 5119 * * * * * * 1168 3504 * * * * * 1782 4264 4269 * * 103 0 * * * * * * 3404 0 0 E 104 * * * 1356 * * * 1873 2674 4709 * 4122 * * * * * 3574 * * 104 0 * * * * * * 3325 0 0 L 105 * * * * * * * 3503 * 1372 928 * * * * * * * * * 105 0 * * * * * * 3176 0 0 D 106 * * 1000 * * * * * * * * 1000 * * * * * * * * 106 0 * * 0 * * * 1501 0 0 //