Email l.a.kelley@imperial.ac.uk Description P0A0G2 Date Tue Jul 17 17:05:05 BST 2012 Unique Job ID 73f7ed2572ee0833

Summary

Top model
Image coloured by rainbow N → C terminus Close Jmol	Model (left) based on template d1bxya_ Top template information Fold:Ribosomal protein L30p/L7e Superfamily:Ribosomal protein L30p/L7e Family:Ribosomal protein L30p/L7e Confidence and coverage Confidence: 99.9% Coverage: 98% 58 residues ( 98% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template. 3D viewing Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1bxy chain A Region: 1 - 58 Aligned: 58 Modelled: 58 Confidence: 99.9% Identity: 47% Fold: Ribosomal protein L30p/L7e Superfamily: Ribosomal protein L30p/L7e Family: Ribosomal protein L30p/L7e Phyre2 PDB 2gyc chain X domain 1 Region: 4 - 58 Aligned: 55 Modelled: 55 Confidence: 99.9% Identity: 49% Fold: Ribosomal protein L30p/L7e Superfamily: Ribosomal protein L30p/L7e Family: Ribosomal protein L30p/L7e Phyre2 PDB 2zjr chain W domain 1 Region: 4 - 58 Aligned: 55 Modelled: 55 Confidence: 99.9% Identity: 56% Fold: Ribosomal protein L30p/L7e Superfamily: Ribosomal protein L30p/L7e Family: Ribosomal protein L30p/L7e Phyre2 PDB 1vqo chain W domain 1 Region: 4 - 58 Aligned: 55 Modelled: 55 Confidence: 99.4% Identity: 24% Fold: Ribosomal protein L30p/L7e Superfamily: Ribosomal protein L30p/L7e Family: Ribosomal protein L30p/L7e Phyre2 PDB 3izc chain E Region: 4 - 58 Aligned: 55 Modelled: 55 Confidence: 99.3% Identity: 18% PDB header:ribosome Chain: E: PDB Molecule:60s ribosomal protein rpl11 (l5p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome Phyre2 PDB 4a1c chain V Region: 4 - 58 Aligned: 55 Modelled: 55 Confidence: 99.3% Identity: 15% PDB header:ribosome Chain: V: PDB Molecule:60s ribosomal protein l7; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Phyre2 PDB 3iz5 chain E Region: 4 - 58 Aligned: 55 Modelled: 55 Confidence: 99.3% Identity: 20% PDB header:ribosome Chain: E: PDB Molecule:60s ribosomal protein l11 (l5p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 3jyw chain F Region: 6 - 58 Aligned: 53 Modelled: 53 Confidence: 99.3% Identity: 19% PDB header:ribosome Chain: F: PDB Molecule:60s ribosomal protein l7(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution Phyre2 PDB 2zkr chain W Region: 4 - 58 Aligned: 55 Modelled: 55 Confidence: 99.3% Identity: 18% PDB header:ribosomal protein/rna Chain: W: PDB Molecule:rna expansion segment es10; PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map Phyre2 PDB 1s1i chain F Region: 4 - 58 Aligned: 55 Modelled: 55 Confidence: 99.2% Identity: 18% PDB header:ribosome Chain: F: PDB Molecule:60s ribosomal protein l7-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h. Phyre2 PDB 3vg8 chain F Region: 21 - 41 Aligned: 21 Modelled: 21 Confidence: 14.1% Identity: 29% PDB header:unknown function Chain: F: PDB Molecule:hypothetical protein tthb210; PDBTitle: crystal structure of hypothetical protein tthb210 from thermus2 thermophilus hb8 Phyre2 PDB 1jhf chain A domain 1 Region: 14 - 29 Aligned: 16 Modelled: 16 Confidence: 9.8% Identity: 31% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: LexA repressor, N-terminal DNA-binding domain Phyre2 PDB 1jr2 chain A Region: 17 - 55 Aligned: 35 Modelled: 39 Confidence: 9.7% Identity: 14% PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase Phyre2 PDB 1jr2 chain A Region: 17 - 55 Aligned: 35 Modelled: 39 Confidence: 9.7% Identity: 14% Fold: HemD-like Superfamily: HemD-like Family: HemD-like Phyre2 PDB 3exc chain X Region: 18 - 58 Aligned: 41 Modelled: 41 Confidence: 8.0% Identity: 20% PDB header:hydrolase Chain: X: PDB Molecule:uncharacterized protein; PDBTitle: structure of the rna'se sso8090 from sulfolobus solfataricus Phyre2 PDB 3re1 chain B Region: 17 - 53 Aligned: 33 Modelled: 37 Confidence: 6.4% Identity: 9% PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthetase; PDBTitle: crystal structure of uroporphyrinogen iii synthase from pseudomonas2 syringae pv. tomato dc3000 Phyre2 PDB 3d8t chain B Region: 17 - 54 Aligned: 34 Modelled: 38 Confidence: 6.0% Identity: 9% PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: thermus thermophilus uroporphyrinogen iii synthase Phyre2 PDB 1ef4 chain A Region: 16 - 30 Aligned: 15 Modelled: 15 Confidence: 5.6% Identity: 33% Fold: DNA/RNA-binding 3-helical bundle Superfamily: RNA polymerase subunit RPB10 Family: RNA polymerase subunit RPB10 Phyre2 1 d1bxya_ 2 d2gycx1 3 d2zjrw1 4 d1vqow1 5 c3izce_ 6 c4a1cV_ 7 c3iz5e_ 8 c3jywF_ 9 c2zkrw_ 10 c1s1iF_ 11 c3vg8F_ 12 d1jhfa1 13 c1jr2A_ 14 d1jr2a_ 15 c3excX_ 16 c3re1B_ 17 c3d8tB_ 18 d1ef4a_

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0