PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3jywF_

Fold library id	PDB Header	Molecule	Title
c3jywF_	PDB header: ribosome	Chain: F: PDB Molecule: 60s ribosomal protein l7(a);	PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution

Links to external resources
Added to library: Sun Aug 29 01:15:21 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G L V F V V R I K G I N K I P P K P R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S S T
S
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V L Q L L R L T R I N S G T F V K V T K A T L E L L K L I E P Y V A Y G Y P S Y S T I R Q L V Y K R G F G K I N K Q R V P L S D N A I I E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S S S
B
S S T T T T T T T T S
S S T T T S S
S S S
S S
S S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N L G K Y G I L S I D D L I H E I I T V G P H F K Q A N N F L W P F K L S N P S G G W G V P R K F K H F I Q G G S F G N R E E F I N K L V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
T T T
S S
T T T T T S
S S B
T T
S S S S S S
T T T S
S S S S S T T

. . .

Sequence S M N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	L	V	F	V	V	R	I	K	G	I	N	K	I	P	P	K	P	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T																T	T	S	S																								T		S												S		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	L	Q	L	L	R	L	T	R	I	N	S	G	T	F	V	K	V	T	K	A	T	L	E	L	L	K	L	I	E	P	Y	V	A	Y	G	Y	P	S	Y	S	T	I	R	Q	L	V	Y	K	R	G	F	G	K	I	N	K	Q	R	V	P	L	S	D	N	A	I	I	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G				S	S	S		B						S	S	T	T	T	T					T	T	T	T	S							S	S	T	T	T	S					S				S	S	S			S	S		S	S	S					S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	L	G	K	Y	G	I	L	S	I	D	D	L	I	H	E	I	I	T	V	G	P	H	F	K	Q	A	N	N	F	L	W	P	F	K	L	S	N	P	S	G	G	W	G	V	P	R	K	F	K	H	F	I	Q	G	G	S	F	G	N	R	E	E	F	I	N	K	L	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S			S													T	T	T		S	S		T	T	T	T	T	S		S	S	B						T	T			S	S	S	S	S	S			T	T	T	S		S	S	S			S	S	T						T
	.	.	.
Sequence	S	M	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T