Phyre 2 Results for C6Y4B4

Email	l.a.kelley@imperial.ac.uk
Description	C6Y4B4
Date	Sun Jul 8 11:45:07 BST 2012
Unique Job ID	74eb616329de7528

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template c2km1A_

Top template information

PDB header:protein binding
Chain: A: PDB Molecule:protein dre2;
PDBTitle: solution structure of the n-terminal domain of the yeast protein dre2

Confidence and coverage

Confidence:

40.0%

Coverage:

34%

41 residues ( 34% of your sequence) have been modelled with 40.0% confidence by the single highest scoring template.

You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.

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3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M Y Q V S N L D L K C G V H N G E L L T V L L P N I M D S G N A T E L G I G V E E W H K R R S S W L L G K K S T E E T D

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ?
? ?
?
? ? ? ? ? ? ?
? ? ?
? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence S S N E V V V P E N V Y L N V Y E A L V Y R R Q K L K R P V K L S I V I A V L K A G W I R D G F W P A P S N S N G V S V

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ?
?
? ?
? ? ? ?
? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. .

Sequence P P

Secondary structure

SS confidence

Disorder ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 2km1 chain A

Region: 67 - 109
Aligned: 41
Modelled: 43
Confidence: 40.0%
Identity: 15%
PDB header:protein binding
Chain: A: PDB Molecule:protein dre2;
PDBTitle: solution structure of the n-terminal domain of the yeast protein dre2

Phyre2

PDB 2j3w chain B domain 1

Region: 74 - 104
Aligned: 31
Modelled: 31
Confidence: 14.7%
Identity: 23%
Fold: Ligand-binding domain in the NO signalling and Golgi transport
Superfamily: Ligand-binding domain in the NO signalling and Golgi transport
Family: TRAPP components

Phyre2

PDB 2xse chain A

Region: 39 - 51
Aligned: 13
Modelled: 13
Confidence: 5.9%
Identity: 31%
PDB header:oxidoreductase
Chain: A: PDB Molecule:thymine dioxygenase jbp1;
PDBTitle: the structural basis for recognition of j-base containing2 dna by a novel dna-binding domain in jbp1

Phyre2

PDB 1qas chain A domain 3

Region: 79 - 101
Aligned: 23
Modelled: 23
Confidence: 5.7%
Identity: 9%
Fold: TIM beta/alpha-barrel
Superfamily: PLC-like phosphodiesterases
Family: Mammalian PLC

Phyre2