Email l.a.kelley@imperial.ac.uk Description A5Z2X5 Date Mon Jul 2 19:10:01 BST 2012 Unique Job ID 985783ac6dbbab53

Summary

Top model

Image coloured by rainbow N → C terminus Close Jmol

Model (left) based on template c4f43A_ Top template information PDB header:recombination/dna Chain: A: PDB Molecule:protelomerase; PDBTitle: protelomerase tela mutant r255a complexed with caag hairpin dna Confidence and coverage Confidence: 16.4% Coverage: 26% 19 residues ( 26% of your sequence) have been modelled with 16.4% confidence by the single highest scoring template. You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library. Please note: You must be registered and logged in to use Phyrealarm. 3D viewing Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 4f43 chain A Region: 20 - 38 Aligned: 19 Modelled: 19 Confidence: 16.4% Identity: 32% PDB header:recombination/dna Chain: A: PDB Molecule:protelomerase; PDBTitle: protelomerase tela mutant r255a complexed with caag hairpin dna Phyre2 PDB 3d6k chain B Region: 23 - 68 Aligned: 46 Modelled: 44 Confidence: 13.2% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:putative aminotransferase; PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae Phyre2 PDB 2pw6 chain A domain 1 Region: 24 - 34 Aligned: 11 Modelled: 11 Confidence: 9.1% Identity: 27% Fold: Phosphorylase/hydrolase-like Superfamily: LigB-like Family: LigB-like Phyre2 PDB 2l9s chain A Region: 2 - 25 Aligned: 24 Modelled: 24 Confidence: 8.9% Identity: 38% PDB header:transcription Chain: A: PDB Molecule:phd finger protein 12; PDBTitle: solution structure of pf1 sid1-msin3a pah2 complex Phyre2 PDB 3a4c chain A Region: 40 - 69 Aligned: 30 Modelled: 30 Confidence: 6.2% Identity: 27% PDB header:cell cycle, replication Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: crystal structure of cdt1 c terminal domain Phyre2 PDB 1u5s chain B domain 1 Region: 31 - 39 Aligned: 9 Modelled: 9 Confidence: 5.5% Identity: 33% Fold: Glucocorticoid receptor-like (DNA-binding domain) Superfamily: Glucocorticoid receptor-like (DNA-binding domain) Family: LIM domain Phyre2 PDB 3ppl chain B Region: 23 - 69 Aligned: 47 Modelled: 44 Confidence: 5.4% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Phyre2 1 c4f43A_ 2 c3d6kB_ 3 d2pw6a1 4 c2l9sA_ 5 c3a4cA_ 6 d1u5sb1 7 c3pplB_

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0