These alignments are for pairs of analogous proteins. These are defined as proteins having similar three-dimensional structures in the absense of strong features suggesting divergence from a common ancestor, such as significant sequence similarity, or a common function.
These were defined by the SCOP database as pairs of proteins from the same fold classification, but from different superfamilies.
The flat format STAMP file can be viewed by clicking on the file name; the superimposition of C-alpha coordinates by clicking on "View superimposition" (you may have to configure your browser to run RasMol when it finds a PDB file - you may also simply download the file and view it locally).
Identifiers correspond to protein databank (PDB) database codes, postfixed with a chain (where relevant) and with further post-fixing denoting a domain description (an explanation will be added at at a later date).
The pdb coordinates should all contains three chains. Chains "A" and "B" correspond to the two structures in the alignment, chain "Z" to the averaged coordinates, approximately indicating the regions of structural similarity. If you use Rasmol, colour by chain should give a meaningful picture. Within the averaged coordinates, residues are named according to whether or not they are identical in the two structures: either they are named as the identical residue or UNK if the residues are different. If you are interested in seeing which positions have the same amino acid, then if you turn everything off ("wireframe off", "backbone off", etc.), and then do "select **Z" followed by "colour shapely", you will see residues colour either magenta (UNK = not-identical) or other colours indicating the conserved amino acid type.
1ausl.1 ykltyytpeyetldtDILAAFRVspqpgvppEEAGAAVAAESStgtwttvwtdgltn 1mla.1 gtGAMAAIIG ldDASIAKACEEAA 1ausl.1_ds -hhhhb-tt----tt-EEEEEEEee-tt--hHHHHHHHHHHTSs--ss--gggggs- 1mla.1_dss tsEEEEEEES --HHHHHHHHHHH- Similar -------------0011111111------00111111111111-------------- 1ausl.1 ldrYKGRCYHIEpvageenqYICYVAYPldlfeegsvtnmftsIVGNVFGfkalRAL 1mla.1 egQVVSPVNFN spGQVVIAGHkea verAGAACKA aGAK 1ausl.1_ds gggT--EEEEEEe-tt-ss-EEEEEEE-gggs-tt-hhhhhhhHHSSGGG-tteEEE 1mla.1_dss ttS-EEEEEEE etTEEEEEEEhhh hhhHHHHHHH tT-S Similar -00111111111------0011111111000---------0001111111---0111 1ausl.1 RLEDLRipvayvk 1mla.1 RALPLPv 1ausl.1_ds EEEEEE--hhhht 1mla.1_dss EEEE-S- Similar 1111110------
1bara PKLLYcSNGGYFLRIl pdGTVDGTKD rSDQHIQLQL
1abrb.1 ivekskicssryepTVRIG GRDGMCVDVydngyhngNRIIMWKCkdrLEENQLWTL
1bara_dssp -EEEEeTTTS-EEEE- ttSBEEEES- tT-STT-EEE
1abrb.1_ds --s---b--s----EE-EE -GGG-EEEEggg--stt-BEEEE---ss--GGG-EEE
Similar --------------11111-1111111110-----0011111111--0111111111
1bara AAesigeVYIKsteTGQFLAMd tdGLLYGSQT pNEECLFLERleengyNTY
1abrb.1 KS dKTIR sNGKCLTTygyapgSYVMIYDCtsavAEATYWEIW dnGTI
1bara_dssp E-sstteEEEEessS--EEEE- tt--EEEESS --GGGEEEEEe-sss-EEE
1abrb.1_ds -T tSBEE eTTEEEEEs-sstt-BEEEE-Ttts-GGGSB-EE- ttS-E
Similar 11----01111--011111110---0011111111---0111111111----00111
1bara ISKKhaekHWFVGL KKNg rsKLGpRTHFGQKAILFLPlp
1abrb.1 INPK sALVLSAeSSSmggtLTV QTNEYLMRQGWRTg
1bara_dssp EEGGggggT-B--B -TTs bb--GgG--TT-GGG-EEEee
1abrb.1_ds EETT tTEEEE---SStt-b-EE E-----GGG--EEs
Similar 1111---0111111-1110-00111-11111111111110-
1bgh iKVEikpsqaQFTTRsgvsrqgkpySLNEQLCyvdlgneypvLVKITLDEgq
1bova tpdcvTGK veYTKYN ddDTFTVKV gDKELFTNRwnl
1bgh_dssp --EEe-ggg---EEEeee-tts-eeEEEEEEEee--ssss-eEEEEE--Tt-
1bova_dssp --eeeEEE eeEEEE- ttS-EEEEE tTEEEEE--ggg
Similar ----0111----0011111--------001111111---------01111111100-
1bgh payaPGLYTvhlssfkvgqfgslmidR lRLVP
1bova qslllsaqitGMTVTiktn achnggGfsEVIF
1bgh_dssp ----SEEEEe-gggeee-ttsseeesS --EEE
1bova_dssp hhhhhhhhhhT-EEEee-s s-stteE--EEEE
Similar ------0000111110000-------0000001-01111
1bgla.2 TQISDF hvAtrfnddfSRAVLEAEVQMcGELR dylRVTVSLWQGE tQva 1bbdl.1 dIVMTQSpssLtv tTGEKVTMTCKS SQSLlnsrtqknYLTWYQQKPGqsPkl 1bgla.2_ds SEEEEE e----b-ttsSEEEEEEEEEEeS--- tteEEEEEEEETT eEee 1bbdl.1_ds ----EEE-seEee eTT-EEEEEEE- SS--eettttee-EEEEEE-TTs--ee Similar -111111-00100----011111111111-1111-----0001111111111-0100 1bgla.2 SGTApfggei iderggyADRVTLRL nVEnpklwsaeipnlYRAVVELHtadg 1bbdl.1 LIYWastresgvpdrftgsgsGTDFTLSIsgVQa edlAVYYCQNN yn 1bgla.2_ds EEEE-s---- -bttb--SSEEEEEE eEEs--bb-ss-b--EEEEEEEEett- 1bbdl.1_ds EEETttee-tt--ss-eeeeeTTEEEEEEes--g gg-EEEEEEE- ss Similar 1111000000----000000011111111-0110--------00011111111--00 1bgla.2 tlIE AEACDVGF 1bbdl.1 ypLTfGAGTKLELk 1bgla.2_ds -eEE EEEEEE-B 1bbdl.1_ds ss--b---EEEEEe Similar 0011-11111111-
1bia.3 finRPVKLIi gdKEIFGISRGIDkq gALLLEQDgIIKPWMgGEIS
1aboa NLFVALydfvasgdntlsitKGEKLRVLGYNhngeWCEAQTKnGQGWVPsNYIT
1bia.3_dss tttSEEEEEe ttEEEEEEEEEE-tt s-EEEEETtEEEEESs-EEE
1aboa_dssp -EEEESs-b---sttb--b-TT-EEEEEEE-ttssEEEEEETtEEEEEEgGGEE
Similar ---1111110-----------001111111111110-01111111011111101111
1bia.3 L
1aboa Pvn
1bia.3_dss E
1aboa_dssp E--
Similar 1--
1clc.1 ietkvsaakitenyqfdsRIR LNSIgFIPNHSKKATIAAn cSTFYVVKE
1noa aap TATvTPSSgLSDGTVVKVAGAGlqagtaYDVGQCAWvdt
1clc.1_dss ---tt---b--s---b-tTEE --SSeE-TTS--EEEESS- --EEEEEET
1noa_dssp --- EEEeES-Ss--TT-EEEEEEES--tt-eEEEEEEEEeet
Similar --------------000-111-1111011111111111110----011111111---
1clc.1 dGTIV YTGTAtsmfdndtketVYIADFsSVNE egTY
1noa gvLACNpaDFSSVtada ngSASTSL TVRRsfegflfdgtrwgtvdcttaAC
1clc.1_dss tSBEE EEEE-eeeeetttteeEEEEE-tT--S -eEE
1noa_dssp teEEE-ggG-EEEe--t ts-EEEEE E--Seeeee-tts-eeeeeettss-E
Similar -01111--111110000-----00111111-1111------------------0011
1clc.1 YLAV pGVGKSVNFK
1noa QVGLsdaagNGPEGVAISf
1clc.1_dss EEEE tTTEE---EE
1noa_dssp EEEEe-tts--S--EE---
Similar 1111----0111111111-
1csp mleGKvKWFn sekgFGFIEVEGQDDVFv
1chpd tpqnitdlcaeyhntqihtlndkIFsYTEsladkreMAIITFKNGATFQvevpgsqh
1csp_dssp -eeEEeEEEe ttttEEEEE-TTS--EEe
1chpd_dssp ---shhhhhttstteeeeeeee---eEEEe-stt--EEEEE-TTS-EEE-----tts
Similar --------------------0011101110--000011111111111110-------
1csp hfsAiqgegfKt leeGqa vsFEIVeGNR gPQAANVtke
1chpd idsqkkaI erMkdtlriayLteakvekLCVW NNKtpHAIAAIsma
1csp_dssp eggGb-ssss-- --tT-e eeEEEEeETT eEEEEEEee-
1chpd_dssp -hhhhhhH hhHhhhhhhhhHht--eeeEEEE TTSssEEEEEEeee
Similar ----0001----0010----000100---001111-111-0111111000
1ctm.1 ypifaqqnyenpreatgrivcanchla sKPVDIe vpqAvlPDTVFEAVVKIP 1ddt.1 spghktqpflhdgYAVSWntvedsiiRtgFQGESGHDIKIT 1ctm.1_dss -hhhhhhh-sssb-tts-bggggt--s b---EEe --sEe-TT-EEEEEEE-- 1ddt.1_dss -ttstt--eeettEEEEEsstgggeeE-sSSEEEEEEEEEE Similar ----------------00000000000-0111110----000100111111111111 1ctm.1 YdmqlkqvlangkkgALN VGAVLIl pegFELAppdrispemkekigNLSFQNyrp 1ddt.1 Ae ntPLPiAGVLLPtipgkLDVNkskthi svngrkiRMRCRA i 1ctm.1_dss --tt--ee-tts-ee--E EEEEEE- -tt-EE--gggs-hhhhhhttT---EEeet 1ddt.1_dss Es ss-EEe-EEEEE-btttBEE-ttt-ee eetteeeEEEEEE - Similar 10-----------00111-1111110-0001111000000-0000000111111--0 1ctm.1 nkknILVIG pvPGq kysEITFPILApDpatnkdvhflkypiYVGGNRgRGQi 1ddt.1 dg dVTFCRpksPVyvgngvhaNLHVAFHRsSseki hsneissdSIGVLG YQKt 1ctm.1_dss teeeEEEEE eeEHh hhsEEEEEEE---ggg-tt--sseeeeEEEEEEs--Sb 1ddt.1_dss ss sEEEEEess-Eeebttb-eEEEEEEEEs--s-- -ttt---sEEEEEE EEE- Similar 01-011111-00110----00011111111010000--00000000111111-1110 1ctm.1 ypdgsks 1ddt.1 vdhtkvnsklslffeik 1ctm.1_dss -tts-b- 1ddt.1_dss gggs-eeeeeeee-eee Similar 0000000----------
1enh rprtafssEQLARLKREFNEnrylTerrRQQLSSELGLNEAQIKIWFQNKRAK
1bia.1 mkdnTVPLKLIALLAN gefH sGEQLGETLGMSRAAINKHIQTLRDWgvdv
1enh_dssp -------hHHHHHHHHHHHH-ss--hhhHHHHHHHHT--HHHHHHHHHHHHHH
1bia.1_dss ----HHHHHHHHHHTT ss-B -HHHHHHHHTS-HHHHHHHHHHHHHTt---
Similar ----0000111111111111-0001--01111111111111111111111111----
1enh
1bia.1 ftvpgkgyslpe
1enh_dssp
1bia.1_dss eeettteee-ss
Similar ------------
1f3g tieiiaplsgeivniedvpdvvfaekivgdgiaikptGNKMVAPVDGTIGKIF e
1ctm.2 NTVYNATAGGIISKILrkek
1f3g_dssp -eeee-ss-eeeeegggss-hhhhttss-eeeeeee-SSEEE-SSSEEEEEE- t
1ctm.2_dss SS--B-SS-EEEEEEEe-tt
Similar -------------------------------------1111111111111111---0
1f3g tnHAFSIE SDSGVELFVHFgidtvelkgeGFKRIAEEGQRVKVGDTVIEfdlplle
1ctm.2 ggYEITIVdASNERQVIDII prGLELLVSEGESIKLDQPLTS
1f3g_dssp tsSEEEEE ETTS-EEEEE-sbsggggtttTEEE-S-TT-EE-TT-EEEEe-hhhhh
1ctm.2_dss s-EEEEEEeTTTTEEEEEEE -tT--B---TT-EE-TT-B-B-
Similar 00111111-11111111111--------0011111111111111111111-------
1f3g ekakstltpvvisnmdeikeliklsgsvtvgetpvirik
1ctm.2
1f3g_dssp hhssb--eeeeettggg-seeee--see-tttseeeeee
1ctm.2_dss
Similar ---------------------------------------
1fnb.1 hskkmeegitvnkfkpktPYVGRCLLNTKItgddapgetWHMVFSHegEIPyregqS 1eft.1 pvrdvd kPFLMPVEDVFTIt grgTVATGRI eRGKv kvG 1fnb.1_dss --sbs-tt----sbbttb-EEEEEEEEEE-s-sssss-eEEEEEE-tt-----tt-E 1eft.1_dss ----ss s--EEEEEEEEEEt tteEEEEEE- -BSEe etT Similar -------000000----01111111111110-----0001111111-01110--001 1fnb.1 VGVIPdgedkngkphklRLYSIAssal gdfgdaKSVSLCVKrliytndagetik 1eft.1 DEVEIvgl apetrkTVVTGVemhrktlqegiagDNVGLLLRgv 1fnb.1_dss EEEE-ssb-ttssb---EEEE--s-ss -ttsss-EEEEEEE--eee-tts-eee 1eft.1_dss -EEEE-ss sss-eeEEEEEEeetteeeseeett-EEEEEETt- Similar 11111000---0000001111110000---0000001111111100----------- 1fnb.1 gvcsnflcDLKPGAEVKltgpvGk 1eft.1 sreEVERGQVLAkpgsiT 1fnb.1_dss -hhhhhhhH--TT-EEEeeeee-s 1eft.1_dss -ttSS-TT-EEEstts-- Similar -----000111111111000001-
1gdha.1 KKKILIT wPL pEAAMARARE sYDVIAH
1cus rttrddlingnsascaDVIFIYArgstetgnlGTlgPSIASNLESafgkdgVWIQGV
1gdha.1_ds --EEEES s-- -HHHHHHHHT tSEEEE-
1cus_dssp ----bhhhhs-ggg--SEEEEEE--tt-stttTTthHHHHHHHHHhh-tttEEEEE-
Similar ----------------1111111--------011-0111111111-----0111111
1gdha.1 gd dpkitIDEMIETAKS vdALLITL NEKcrkeV
1cus ggayratlgdnalprgtssaaIREMLGLFQQantkcpdatlIAGGYSqgAALa aaS
1gdha.1_ds -s tt---HHHHHHHHTT -sEEEEET TS-b-hhH
1cus_dssp -tt----gggggsttss-hhhHHHHHHHHHHhhhh-tt-eeEEEEEThhHHHh hhH
Similar 00--------------000001111111111--------00111111--1110-001
1gdha.1 IDRI pENIKCISTYs igfDh idLdAckargiKVGNAPhg
1cus IEDLdsairDKIAGTVLFgytknLqnrgrIpNy padRTKVFCntgdlvctgsliv
1gdha.1_ds HHHS -TT--EEEEEs s--Tt b-HhHhhhtt-EEE----s
1cus_dssp HHHS-hhhhTTEEEEEEEs-tttTtttt--tTs -ggGEEEE--tt-ggggt----
Similar 1111----11111111110-00010--001010--00011111100-----------
1gdha.1 atqaREDM aHQANDLIDALFGGADMsyal
1cus aaphlaYGPDarGPAPEFLIEKVRAVRG
1gdha.1_ds bhhhHHHH hHHHHHHHHHHHTTS--ttb-
1cus_dssp -gggg--HHHhhTHHHHHHHHHHHHHH-
Similar --00001111-01111111111111111----
1gof.1 ytapqpglgrwgptidlpivpaaaaiept sgRVLMWSsyrndAFggspggITLTS
2bbkh deprileapapdarRVYVND paHF aaVTQQF
1gof.1_dss -----tts-eeeeeee-ss--seeee-tt t--EEEE-sssss--tt--ss-EEEE
2bbkh_dssp ----b-------ttEEEEEE -gGG -sSEEEE
Similar -------------------0000000000--00111111---0011----0011111
1gof.1 SWDPSTGIVsdrtvtvtkhdMFCPGISMd gngQIVVTgg ndaKKTSLY
2bbkh VIDGEAGRVigm idgGFLPNPVVaddgsFIAHAstvfsriargertDYVEVF
1gof.1_dss EE-TTT--Eeeeee-tt----SS-EEEE- tts-EEEE-t tstT-EEEE
2bbkh_dssp EEETTTTEEeee eee-SS-EEEE-ttss-EEEEeeeeeetteeeeeEEEEEE
Similar 111111111000-----000111111110-0001111100--------000111111
1gof.1 DSSSDSWIpGPDM qVARg yqsSATMSD GRVFTIGgswsggvFEKNGEVYS
2bbkh DPVTLLPTaDIELpdaPRFlvgtypwmTSLTPDgKTLLFYQ fsPAPAVGVVD
1gof.1_dss ETTTTEEEe---- sS--b s-eEEE-TT S-EEEE--bsss-sS---EEEEE
2bbkh_dssp -TTT--EEeEEEEtt-----bs--gggEEE-TTsSEEEEEE -sSS-EEEEEE
Similar 1111111101111--01110----000111111-1111111-----00111111111
1gof.1 PSSKTWTSLPNakvnpmltadkqglyrsdnhaWLFGWKkGSVFQAgpsTAMNWYYTs
2bbkh LEGKAFKRMLDvp dcyHIFPTApDTFFMHcrdGSLAKVAFg
1gof.1_dss TTTTEEEEETTs-sggg----ttthhhhtss--EEE-GgG-EEE--ssSEEEEEE-s
2bbkh_dssp TTTTEEEEEEE-- seeEEEEEEtTEEEEEettS-EEEEE--
Similar 1111111111100----------------0001111110111111000111111110
1gof.1 gSGDVKSAGKrqsnrgvaPDAMcGNAVMydavkGKILTFGgspdyqdsdaTTNAH
2bbkh tegTPEITHTEVfh pedEFLI NHPAY sqkaGRLVWPT yTGKIH
1gof.1_dss tT-EEEEEEE-eettee----Bt-EEEEeetttTEEEEE--bssssssb----EE
2bbkh_dssp sss--EEEE----s -ttS-B- S--EE etttTEEEEEB tTSEEE
Similar --011111111100---0001111-11111-00001111111---------011111
1gof.1 IITlgepgtsPNtvfa snglyfART FHTSVV lPDGSTFItggqrrgip
2bbkh QIDls sgdAKflpavealteaeradgwRPGgWQQVAYhrALDRIYLlvdqr de
1gof.1_dss EEE--stts--Eeee- tt--ss--B S-EEEE -TTS-EEEe--bsb--t
2bbkh_dssp EEE-t tss-Ee---eess-hhhhhtteEE-sSS-EEEetTTTEEEEeeee- -t
Similar 11100--000110000-------000000111-111111-0111111100000--00
1gof.1 fedstPVFTPEIYVPEQDTFYKQNPNSIVRvyhsISLL lpdGRVFNGGgglcgdc
2bbkh wrhktASRFVVVLDAKTGERLAKFEMGHEI dSINVsqdekPLLYALS
1gof.1_dss t---sB----EEEEGGGTEEEE----SS---tteEEEE -ttS-EEEEE----tts
2bbkh_dssp t-tts-EEEEEEEETTT--EEEEEEEEEEE -EEEE--sss-EEEEEE
Similar 000001111111111111111111111111---01111--0001111111-------
1gof.1 ttNHFDAQIFTPnylyns
2bbkh tGDKTLYIHDA esgeelrsvnqlghgpqvittadm
1gof.1_dss s----EEEEEE-gggb-t
2bbkh_dssp tTTTEEEEEET tt--eeeee----ss--eee----
Similar -01111111111-00000-------------------
1igd mtpAVTTYKLVIngktLKGETTTKAVDaeTAEKAfkqya ndngvdgvWT
1frd ASYQVRLIN kkQDIDTTIEIDEetTILDGaeengielpfschsgscsscvGK
1igd_dssp -----EEEEEEEe-ss-EEEEEEEESShhHHHHHhhhhh hhtt---eEE
1frd_dssp -EEEEEEEE ttTTEEEEEEEETts-HHHHhhhtt-----sssssssstteEE
Similar ---111111111--0011111111111001111100000--------0000000011
1igd yDD atKTFTvt
1frd vvEGevdqsdqiflddeqmgkgfallcvtyprsnCTIKthqepyl
1igd_dssp eET ttTEEEee
1frd_dssp eeES-ee-tt--s--hhhhhtteeeggg-eesssEEEE---ggg-
Similar -011----------------------------00111100-----
1ilr1 skMQAFRIWDvNQKTFYLR nnQLVAGylqgpnvnleEKIDVVPiep
2aaib.1 advcmdpEPIVRIVGrNGLCVDVRdgrfhngnAIQLWpck sntdanQLWTLKR
1ilr1_dssp ---EEEEEEEtT--EEEEE ttEEEEE---gggggg---EEEEEett
2aaib.1_ds --b------EE-EE-gGG-EEEEGgg--stt-BEEEE--- ss--ggG-EEE-T
Similar -----0011111111011111111------0011111000-0000001111111---
1ilr1 halFLGIhggKMCLSCvksgdeTRLQLEAvnitdlsenrkqDKRFAFIRSDsgptTS
2aaib.1 dnTIRS nGKCLTTygyspgVYVMIYDc ntaaTDATRWQIWD nGT
1ilr1_dssp teeEEEEtttTEEEEEeeetteEEEEEE---ggg--tt-ggGGGGEEEEEEetteEE
2aaib.1_ds tsBEEE tTEEEEEs-sstt-BEEEEEt tts-GGGSB-EE-T tS-
Similar -001111--011111100000011111110-------00001111111111---011
1ilr1 FESaaCPGWFLC tAMEADQPVSLTNMPDEgvmvTKFYFqed
2aaib.1 IIN pRSSLVLAatSGNSGTTLTVQTNIYA vsQGWLPt
1ilr1_dssp EEEssSTT-EEE eESSTTEE-EEES-SSSssee--EEEee-
2aaib.1_ds EEE eTTEEEEE-sS-STT-B-EEEE---- ggG--EE-
Similar 111-01111111-01111111111111111--01111110--
1le4 QRWELALGRFWDYLRWVQTlseqvqeellssQVTQELRALm deTMKE
1bbha aglspeeqiETRQAGYEFMGWNMGKIKAnlegeynaaqveAAANVIAAIansgMGAL
1le4_dssp -HHHHHHHHHHHHHHHHHH--hhhhhhtsssHHHHHHHHHh hhHHHH
1bbha_dssp ----hhhhhHHHHHHHHHHHHHHHHHHHhhhs---hhhhhHHHHHHHHHhts-GGGG
Similar ---------11111111111111111110000000000001111111110-001111
1le4 LkayKseleeqltpvaeetrarlskeLQAAqaRLgADMEDVRGRLVQYRGevqamlg
1bbha Y gPgtdknvgd vktrvkpeFFQNmeDVgKIAREFVGAANTLAEvaa
1le4_dssp HhhhHhhhttt---tttthhhhhhhhHHHHhhHHhHHHHHHHHHHHHHHHhhhhhtt
1bbha_dssp S -Ggggs-btt b---b-ggGTT-hhHHhHHHHHHHHHHHHHHHhht
Similar 1--0100000000-----00000000111100110111111111111111000----
1le4 qstEELRVRLASHLRKLRKRLL RDAddlqkrlav
1bbha tgeAEAVKTAFGDVGAACKSCHeKYRa
1le4_dssp s--HHHHHHHHHHHHHHHHHHH HHHhhhhhhhht
1bbha_dssp tt-HHHHHHHHHHHHHHHHHHHhHHB-
Similar 0001111111111111111111-1110--------
1lpe gqrwelalgrfwdylrwvqTlseqvqeellssqvtqelralmdetmkelKayKSELE
1buca.1 gkgfkiaM mtld ggrigvaaqalgiaEaaLADAV
1lpe_dssp --hhhhhhhhhhhhhhhhhT--hhhhhhhhsshhhhhhhhhhhhhhhhhHhhHHHHT
1buca.1_ds tbhhhhhH hhhh hhhhhhhhhhhhhhHhhHHHHH
Similar ------------00000001--0000---------0000000000000010011111
1lpe Eql tpvAEETRARLSKELQAAQARLGADMEDVCGRlvqyrgevqamlgq
1buca.1 EyskqrvqfgkplcKFQSISFKLADMKMQIEAARNLVYKAACKkq
1lpe_dssp Ts- -s--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhtttts
1buca.1_ds Hhhhh-eetteeggGSHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Similar 100--------0001111111111111111111111111111100------------
1lpe steelrvrlAshLRKLRKRLLRDADDLQKRLAVYQag
1buca.1 egkpfTvdAAIAKRVASDVAMRVTTEAVQIFggygyseeypvarhmrdakitq
1lpe_dssp --hhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHTt-
1buca.1_ds ht---HhhHHHHHHHHHHHHHHHHHHHHHHHgggggsttsshhhhhhhhgggg
Similar ----000001001111111111111111111111100--------------------
1lpe
1buca.1 iyegtnevqlmvtggall
1lpe_dssp
1buca.1_ds ttts-hhhhhhhhhhhht
Similar ------------------
1lyla.1 fndelrnrreklaalrqqgvafpndFrrdhtsdqlheefdakdnqeleslnIEVSVa
1ltsd apqtItel cseyrNTQIYt
1lyla.1_ds -hhhhhhhhhhhhhhhhts-ss---------hhhhhhhhtts-hhhhhhs--EEEEe
1ltsd_dssp --ssHhhh hhtstTEEEEe
Similar ---------------------00001000-----------------00000111110
1lyla.1 gRMMTRRIM gkASFVTLqdvggRIQLYV ardslpeGVYnDQ
1ltsd indKILSYTESmagkreMVIITF ksGETFQVevpgsqhidsqkka ieRMK DT
1lyla.1_ds eEEEEEEE- ssEEEEEEeetteEEEEEE ettts-tTHHhHT
1ltsd_dssp eee--SEEEEE-stt--EEEEE- ttS-EEEE----tts-tthhhh hhHHH HH
Similar --011111111----00111111---00111111----------0000-00111-11
1lyla.1 FKKWD lGDI iGARGTlfktqtgelSIHCTELRLLtkalrpl
1ltsd LRITYltETKidKLCVWn nktPNSIAAISMK
1lyla.1_ds GGG-- tT-E eEEEEEeeeettteeEEEEEEEEEEe--ss--
1ltsd_dssp HHHHHhtT--eeEEEEE- sssSEEEEEEEEE
Similar 11111-0111-0111110-----0001111111111-------
1mcti ricpriWMECTRDSDcMAKCICV aGHC
1lpba.1 giiinld eGELCLNSAQ CKSNCCQhdtilslSRCalka
1mcti_dssp --ee----B-SSGGGsSTT--EE tTEE
1lpba.1_ds ----sb- bTSB-SSGGG BSSS-EE-sssss--EE---b
Similar ---0000-0111111111-1111111------0111----
1mjc SGKMTG IVKWfNADKGFGFITPDDGsKDVFVHFsaiqndgY
1tssa.1 stndnikdlldwyssGSDTFTnSEVL DNSLGSMRIKNTDG SISLIIFp spyY
1mjc_dssp ---EEE EEEEeETTTTEEEEEETTS---EEEEGggb--ttT
1tssa.1_ds ---hhhhhhhhhhhs--EEEEeEEEE E--TTEEEEE-TTS -EEEEE-- -ss-
Similar ---------------111111-1111-11111111111111-11111110---0001
1mjc KSLD EGQKVSFTIes gakgPAAGN VTS
1tssa.1 sPAFTkgEKVDLNTKRtkksqhtsegtyiHFQISgVTNte
1mjc_dssp ---- TT-EEEEEEe- -sss-EEEE EEE
1tssa.1_ds -----tt-EEEEEEEEeeeeeeettteeeEEEES-EE---
Similar -1111--11111111100-------000011111-111--
1oaca.1 krphpLNA lTADEIKQAVEIVKAsaDfK PNTRFTEISLLPpdkeavwafale
1cewi gapvPVDendegLQRALQFAMAEYNR aSnDkYSSRVVRVISAKrql
1oaca.1_ds ss--tT-- --HHHHHHHHHHHHTstT-- TT-EEEEEEEE---hhhhhhhhhh
1cewi_dssp ---eE--tt-hhHHHHHHHHTHHHHT tS--sEEEEEEEEEEEEeee
Similar -0000111----011111111111111-0101-111111111111000---------
1oaca.1 nkpvdqpRKADVIML dgKHIIEAVVDL qn
1cewi vsgikYILQVEIGrttcpkssgdlqscefhdepemAKYTTCTFVVysipwlnqik
1oaca.1_ds -----s--EEEEEEE etTEEEEEEEET tt
1cewi_dssp ssseeEEEEEEEEeeeeett-tthhhhhhhh-ss-S-EEEEEEEEeeetttteee
Similar --0000011111111--------------------001111111111--------00
1oaca.1 NKLLSWqpikdah
1cewi LLESKC
1oaca.1_ds TEEEEEeeett--
1cewi_dssp EEEEEE
Similar 111111-------
1pda.1 nhhetalrvtaeramntrleggcqvpIG SYAEL idgEIWLRALVGaPd 1pkp.1 inpnklel eERvVAVNRvakvvkggrrlRFSALVVVGdK 1pda.1_dss --hhhhhhhhhhhhhhhhtt--tts-EE EEEEE ettEEEEEEEEE-Tt 1pkp.1_dss --gggs-- eEEeEEEE-sssb-ss--ss-EEEEEEEE-S Similar -------------00000000----011-11111--------00011111111101- 1pda.1 gsQIIRGERRGapQDAEQMGISLAEELLNNgarEILae 1pkp.1 ngHVGFGTGKA QEVPEAIRKAIEDAKKN liEVPi 1pda.1_dss ss-EEEEEEEE-gGGHHHHHHHHHHHHHHTthhHHHht 1pkp.1_dss ssEEEEEEEEE SSHHHHHHHHHHHHTTS -eE--- Similar 00111111111--11111111111111111-001110-
1pil mkKID aiIKpfklDDVREAlaevgitgMTVtevkgfgrqkghtelyrgaeymvdf
1fxd PIEvnddCMa cEACVEIc pdvFEMne
1pil_dssp -eEEE eeE-ttthHHHHHHhhhtt----EEeeeeees--tt---ss---sss--e
1fxd_dssp -EEe-tt--- --HHHHH- tttEEE-s
Similar --111--00110--01111110----00011100-----------------------
1pil lpkVKIEIVvpddivdTCVDTIIRTaqtgkigDGKifvfdvarvirirtgeeddaa
1fxd egdKAVVINpds dlDCVEEAIDS cpaEAIvr
1pil_dssp eeeEEEEEEe-hhhhhHHHHHHHHHh--sstt---eeeee-s-eeetttteee-tt
1fxd_dssp sssSEEES-tt- --HHHHHHHHH -tt--Eee
Similar 000111111000--00111111111----00011100-------------------
1rbla.1 saagykagvkdykltyytpdytpkdtDLLAAFRFspqpgvpADEAGAAIaAEsstgt
2bopa SCFALISGt anqVKCYRFRVkKNh
1rbla.1_ds -------b---thhhhb-tt----ttSEEEEEEEee-tt--HHHHHHHHhHHttt--
2bopa_dssp -EEEEEEE- hhhHHHHHHHHhHH-
Similar --------------------------111111110---000111111111110----
1rbla.1 wttvwtdlltdmdrykGKCYHIEP vageensYFAFIAYpldlfeegsvt
2bopa rhryENCTTTWFtvadngaerqg qAQILITFg sps
1rbla.1_ds ssb-gggggs-hhhh--EEEEEEE -tt-tt-EEEEEEE-gggs-tt-hh
2bopa_dssp ggg-SEE---EEee-sstt-eee eEEEEEEEs shh
Similar ------------000011111111--------000---011111110-------000
1rbla.1 nIlTSIVGNVfgfkaiRSLRLEDiRFpVAlvk
2bopa qR QDFLKHV plpPGMNISG FTaSLd
1rbla.1_ds hHhHHHHSSGgg-tteEEEEEEEeE--HHhht
2bopa_dssp hH HHHHHHS ---TT-EEEE EE----
Similar 01-1111111---0001111111-110110--
1scua.1 ncpgvitpgeckigiqpghihkpgkVGIVSR sGTLTYEAVKQTTDYGFGqST
4fxn MKIVYWsgtgntEKMAELIAKGIIESGKD VN
1scua.1_ds ss-eeeettteeees--ggg--eeeEEEEES -HHHHHHHHHHHHHTS--eEE
4fxn_dssp -EEEEE-ssshhHHHHHHHHHHHHHTT-- -E
Similar -------------------------111111-----011111111111111111-11
1scua.1 CVGiggdpipgsnfidILEMFEkdpqTEAIVMIGEIg gsaEEEAAAYIKEH
4fxn TINv sdvNIDELL nEDILILGCSAmgdevleeseFEPFIEEISTK
1scua.1_ds EEE--ssss-ss-hhhHHHHHHh-tt--EEEEEEESs sshHHHHHHHHHTT
4fxn_dssp EEEt tt--STTTT t-SEEEEEE--btttb--tttHHHHHHHHSTT
Similar 1110---------000111111---011111111110------00011111111111
1scua.1 vtKPVVGYIAgvtAPkgkrmghagaiiaggkgtADEKFAALEA AGVKTVR
4fxn isgKKVALFGS yGWg dgkwMRDFEERMNGygCVVVETPlivq
1scua.1_ds --S-EEEEEE-tt--tt---sstt----ss-s-HHHHHHHHHH TS-EE-S
4fxn_dssp -tt-EEEEEEE eSSs -shhHHHHHHHHHHtt-EE-S--eeee
Similar -0011111111--0110-------------00011111111111--1111111----
1scua.1 slADIGEALKtvl
4fxn nepdeaeqdciEFGKKIAN
1scua.1_ds -gGGHHHHHHhhh
4fxn_dssp s--ggghhhhhHHHHHHHT
Similar ---------0011111111---
1smpi sslrlpSAAELSGQWVLsgaeQHCDIRLNtdvldgTTWKLAGdtaclqkllpeapVG
1sria AEAGITGTWYN qLGSTFIVTa gadGALTGTYesavgn aesryvLT
1smpi_dssp -b-----HHHH-EEEEEe-ss-EEEEEEEeeeeetTEEEEEE-hhhhhhhsss---E
1sria_dssp -HHHH-EEEEE tTS-EEEEEe -ttSEEEEEEe-ssss --seeeEE
Similar ------11111111111---0111111110--0001111111000000-00000011
1smpi WRP tpDGLTLTqa dgsavAFFSRN rdRYEHKL
1sria GRYdsapasgTALGWTvawknnyrnahsattWSGQYVggaeaRINTQWlltsgttea
1smpi_dssp EEE -sSEEEEE-t ts-eeEEEEEE ttEEEEE-
1sria_dssp EEE-ss----EEEEEEeeee-ss-eeeeeeeEEEEEE-stt-EEEEEEeeee---gg
Similar 111-----0011111100--------00000111111---00111111---------
1smpi vdgSVRTLKK
1sria nawkstlvGHDTFTK
1smpi_dssp tt--EEEEEE
1sria_dssp gggg-eeeEEEEEEE
Similar -----0001111111
1srda atkkavavlkgtsnveGVVtLtqeddgPTTVNVRiSglapGKHGFHLHEfgdttngc
1cid.1 TSItAyksegeSAEFSFP LnlgeESLQGELRWkae k
1srda_dssp -eeeeeee-b-sss---EEeEeeetts-EEEEEEeEs--sEE--EEEES----ttgg
1cid.1_dss ---eEeeetts-EEEE-- ---ss--EEEEEEEees s
Similar ----------------111010000001111111-10000111111111000----0
1srda mstgPHfnpdkkthg apedevRH aGd lgnivantdgvaEATIVdnqi
1cid.1 apssQS witfslknqkvsv qkSTsnpkFqlset lPLTLQ ip
1srda_dssp ggg-SB--tt----- -ss-ss-- sSb ----ee-ttseeEEEEEess-
1cid.1_dss ---s-- eeeeeeetteeee es---ss--ee-sb tT-EEE e-
Similar 000011-----0000------000-0011---010-000--------011111--01
1srda PLTGpnsVVGRALVVHEleddlgkgghelspttgnaggrLACgvvgltp
1cid.1 QVSL qFAGSGNLTLTl drgiLYQevnl
1srda_dssp -SSStt--TT-EEEEESs---tt-s-ssstttt-s---eEEEee-eee-
1cid.1_dss S--G gG-EEEEEEEE- ssseEEEeeee
Similar 1111--011111111110-----------------00001110000---
1srya.1 mvdlkrlrqepevfhrairekgvALDLEALLAL DREVQELKKRLQEVQTERNQVAK 1abma.1 khslpdlpydygal epHINAQIMQLHhSKHHAAYVNNLNVTEEKYQEALA 1srya.1_ds ---hhhhhh-hhhhhhhhhhtt----HHHHHHH HHHHHHHHHHHHHHHHHHHHHHH 1abma.1_ds -------ss-gggg ttTS-HHHHHHHhHTHHHHHHHHHHHHHHHHHHHHH Similar ----00000000000000---001111111111-11111111111111111111111 1srya.1 RvpkappeekealIARGKALGEEAKRLEEALREKEARLEAlllqvplppwpga 1abma.1 K gdVTAQIALQPALKFNGGGHINHSIFWTNls 1srya.1_ds Httt--gggthhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhtt------tts 1abma.1_ds T t-HHHHHHHHHHHHHHHHHHHHHHHHHHHb- Similar 1----------0011111111111111111111111111100-----------
1sxca atkavcvlkgdGpvqG tIhF eAKgdtvVVTGSITGl tEGDHGFHvhqfg
1ncia gsD wvIppInLpensRG pfpQELVRIRSgrdknlSLRYSVTgpg
1sxca_dssp --eeeeeeb-sSs-eE eEeE eEEtteeEEEEEEES- -SEEEEEEees--
1ncia_dssp --S -----EeEett--- -ssEEEEE--Bggggts--EEEEEsbt
Similar ---------001-001-0101---011-000111111111----01111111000--
1sxca dntqgctsagphfnplskkhggpkdeerhVG dlGNVTadkngvAIVDivdplis L
1ncia adqpPTgifIINP isGQLS vtkplD
1sxca_dssp --ttttggg-sb--tt------tt-ss--TT eeEEEEe-tts-EEEEeeess-b S
1ncia_dssp ttbsSTtseEE-T tt-EEE e-s---
Similar -------------------------000011-001111----001111---0000-1
1sxca SGeysIIGRTMVVHEkpddlgrggneestktgnagsrLACGVIGIA
1ncia RE lIARFHLRAHAvding nqvenPIDIVINVI
1sxca_dssp SGggb-TTSEEEEESs---tt-ssstthhhhtt--seEEEEE-EE-
1ncia_dssp TT t-SEEEEEEEEe-tts -bss--EEEEEEEE
Similar 11--0111111111100000------------00000111111111
1tie vlldgngevvqnGGTYYLLPQvwaqggGVQLAktgeetcpLTVVqSPNEl sdG
8i1b QLHYRLRDEq qkSLVLS dpYELK ALHLngqninqQ
1tie_dssp --b-tts-b--tT-EEEEEESsggg---EEEE--tt-ss--EEEe-S-Tt ---
8i1b_dssp -EEEEEEETt --EEEEE ttTEEE EE---ggggttB
Similar ------------1111111110---0011111------001111-11110----001
1tie KPIRIESRlrsafipdDDKVRIGFAYapkcapsPWWTVV egLSVKLSED est
8i1b VIFSMSFVqg epsndKIPVALGLKG knLYLSCVmkdgtPTLQLESVdpkqy
1tie_dssp S-EEEEESs--ss--tT--EEEEESS--tt-s-SBEEEE ---EEEE-SS sgg
8i1b_dssp --EEEEE-s- ---ssEEEEEEEETT ssEEEEEEeetteEEEEEEE--ttt-
Similar 1111111100-000001111111111-----00111111---0111111111--000
1tie qf dyPFKFEQVsdqlHSYKLLYCegkhekC ASIGInrdqkgyRRLVVTe
8i1b pkkkmekrfVFNKIEV kSKVEFESA efPnWYISTs qaehKPVFLGnns
1tie_dssp gg ---EEEEEEetttTEEEEEEE-sttt-E EEEEEee-tts-EEEEE-s
8i1b_dssp s-ss--gggEEEEEEE tTEEEEEES ssTt-EEEB- ssssEE-EEE---
Similar 00-----001111111---011111111----001-111110--00011111110--
1tie dYPLTVVLKKd
8i1b gqDIIDFTMES
1tie_dssp sSB-EEEEEE-
8i1b_dssp tt-B--EEEEE
Similar -0111111111-
1ttaa gptgtgeskcpLMVKVLdavrgspaiNVAVHVfrkaaddtwEPF aSGKT
1cdg.1 lsgdqvsVRFVVNnat talgqNVYLTG sVSElgnwdpakaIGPM
1ttaa_dssp ---sss-ss--EEEEEEettttee--S-EEEEeee-tts-eEEE eEEE-
1cdg.1_dss -ssseeeEEEEEE--- --tt-EEEEEE sSGGgttt-ggg-B---
Similar ----0000000111111000-00000111111--------0111--------01111
1ttaa S esGELhgltteeeFVEGIYKVEIdtksywkalgispfhehaEVVFTAnd
1cdg.1 YnqvvyqypnWYYdv svPAGKTIEFKFlkkqgs tvtweggsNHTFTA
1ttaa_dssp - ttSEE--s--ttt--SEEEEEEE-hhhhhhttt---seeeeEEEEEE-t
1cdg.1_dss B-ssss-ttsEEEee eeETT-EEEEEEeeeett eeee--ss-EEEE-
Similar 1-------0011100----001111111111000000----00000000111111--
1ttaa sgPRRYTIAALLspysysttavvtnpk
1cdg.1 psSGTATINVNWq
1ttaa_dssp ts--EEEEEEEEetteeeeeeeee---
1cdg.1_dss -sSS-EEEEEE--
Similar 0011111111110--------------
1ubi MQIFVkTLT gkTITLEVEPSDtieNVKAKIQ dKEGIPP dQQRLIF
4fxc atYKVTL INEaegiNETIDCDDDT YILDAAEeaGLDLPYscragacsTCAGTI
1ubi_dssp -EEEEeETT s-EEEEE--TT-bhhHHHHHHH hHH---G gGEEEEE
4fxc_dssp ---EEEE E-Stts-EEEEE--TTS -HHHHHHhtT-----ssssss-sSSBEEE
Similar --11111-111--011111111111---1111111-0111111-------0111111
1ubi agKQL eDGRTlsdyniqKESTLHLVlRlrg
4fxc tsgtidqsdqsfldddqieaGYVltCVAYp tSDCTIKTHqEegl
1ubi_dssp ttEE- -TTSBggggt--TT-EEEEEe--s-
4fxc_dssp eeeeee--s-ss--hhhhhtTEE-gGG-Ee eEEEEEESBtTtt-
Similar ------------------00111-011110-----01111111101000
1udii tnlsdiieketgkqLVIQESil mlpeeveEVI gNKPesDIL VHTAYDe
1stfi mmsgapSATQPAtaetqhiadqvrSQLeekynKKF pVFKaVSFKSQvv
1udii_dssp -hhhhhhhhhhs------EEee e-hhhhhHHH sS--ss-EE EEEEEEt
1stfi_dssp --bs-----EE--hhhhhhhhtthHHHhhhht--- s--EeEEEEEEes
Similar --------00000011111100---0000000111----0111-0111-1111110-
1udii stDENVMLLtsdapeykpWALVIQDS nGEN KIKM
1stfi agTNYFIKVhvg dedFVHLRVFQslphenkpLTLsNYQTnkakhdelty
1udii_dssp ttTEEEEEEeesttt--eEEEEEE-T tS-E EEEE
1stfi_dssp seEEEEEEEe-s ss-EEEEEEEEe-ggg----EEeEEEEee-tts----
Similar 001111111000---00011111111-------0111-1111----------
1vmoa rtreYTSVItvpnG ghwGK wgIR qfchSGYANGFALKVep
1dlc.1 lypkevkteltRDVLTdpivGvnnlrgygTTfsnienYIrkphlFDYLHRIQFHTrf
1vmoa_dssp --s--SEEE--ssS ---SE e--- ee-sSS-EEEEEEEE--
1dlc.1_dss t--sbee-----EEE-----S-s--tt-s--hhhhhtTS--s---EEEEEEEEEEee
Similar -------00001111100011-----00011----0011-00001111111111100
1vmoa s qfgrdDTALNGIRLRC ldGSViesLVGK WGTWtSFLVCpTGYLVSF
1dlc.1 qpgyygndsFNYWSGNYVSTrpsigsndIITspfYGNKsSEPV QNLEFnGEKVYRA
1vmoa_dssp s -sss------EEEEEE ttS-Ee--S--S SSEE---EE-sSS-EEEE
1dlc.1_dss e--ttstt-EEEEEEEEEEEeestt----EE---EE---SS-- EEEE-tT-EEEEE
Similar 0---0000011111111111------001110001111-1111-1111101111111
1vmoa SLRSEks qgggDDTAANNIQFRC sdEAVLVGDGL SWGRFGPWs
1dlc.1 VANTNlavwpsaVYSGVTKVEFSQyndqtdeASTQTYDSKrNVGAVSWDsidqlppe
1vmoa_dssp EEEE--- -ss-------EEEEEE ttS-EEE-S-- --SEE----
1dlc.1_dss EEEEEeeeetteEEEEEEEEEEEEeetttteEEEEEEE-Ss---EEEEEgggts--s
Similar 1111100-0000111111111111-----00111111111-111111110-------
1vmoa krCKICGLQTKVespqglrddTAlNNVRFFCC
1dlc.1 ttdeplekgysHQLNYVMCFLm qgsRG TIPVLTWThksv
1vmoa_dssp ----EEEEEEEEestts-ttt-EeEEEEEEE-
1dlc.1_dss -sss-hhhh--EEEEEEEEEE- ggg-- EEEEEEEEett-
Similar ---------0011111111110-----00011-11111111----
1yrna ispqaRAfLEQvfrrkqs lnskeKEEVAKKCGITPLQVRVWFINKRMR
1dtr.1 lvdtTEmYLRtiyeleeegvtplRARIAERLEQSGPTVSQTVARMERDglvvvasd
1yrna_dssp --hhhHHhHHHhhhh-ss --hhhHHHHHHHTTS-HHHHHHHHHHHHHH
1dtr.1_dss ---hHHhHHHhhhhhhhhts--bHHHHHHHTTS-HHHHHHHHHHHHTTtseee-ss
Similar -00001101110100000-000001111111111111111111111111--------
1yrna
1dtr.1 rslq
1yrna_dssp
1dtr.1_dss sbee
Similar ----
1ytba.1 sgivptlQNIVATVTL gcRL dLKTVALHa rnA 3pmga.1 RNFFTRYDYeeveaegATkmMKDLEALmfdrsfvgkqfsandkvytvekA 1ytba.1_ds -----eeEEEEEEEE- -s-- -HHHHHHHs ssE 3pmga.1_ds EEEEEEEEEeee-hhhHHhhHHHHHHHhhsttstt-eeeetteeeeeeeE Similar -------111111111-----0011-011111110-------------------001 1ytba.1 EYn pkRfAAVIMRIrepkTTALIF aSGKMVVTGa 3pmga.1 DNfeyhdpvdgsvsKnQGLRLIFa dgSRIIFRlsgtgsagaTIRLYIDSyekdnak 1ytba.1_ds E-- ttT-SSEEEEEttttEEEEE- tTSEEEEEEe 3pmga.1_ds EE--ee-ttt--ee----EEEEEt ts-EEEEEeee-sss-eEEEEEEEEee--ttt Similar 110---------001011111110-00111111--------0111111110------ 1ytba.1 ksEDDSKLASRKYARIiqkigfaAKFtd 3pmga.1 inqdpQVMLAPLISIALKVsqlqertGRTaptvi 1ytba.1_ds ssHHHHHHHHHHHHHHhhhht-----ee 3pmga.1_ds tts-hHHHHHHHHHHHHHHhthhhhh--Ss-see Similar ---0011111111111111000000011100---
256ba adlednmetlndnlkviekaDNAAQVKDALTKMRAAALDAQKAtpp kledk
3mdda.1 gagfkiamgTFDKTRPPVAAGAVGLAQRALDEatkyalerktfgkl
256ba_dssp --hhhhhhhhhhhhhhhhh--SHHHHHHHHHHHHHHHHHHTTS--g ggtts
3mdda.1_ds tbhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhtt-eettee
Similar -----------00000000011111111111111111111111000------00000
256ba sPd sPEMKDFRHGFDILVGQIDDALKLANEGKvkeAQAAAEQ lKttrnayhq
3mdda.1 lAehqgisFLLADMAMKVELARLSYQRAAWEIDSGR rNTYYASIakAyaadianq
256ba_dssp -Tt sHHHHHHHHHHHHHHHHHHHHHHHHHTT-hhhHHHHHTH hHhhhhhhhh
3mdda.1_ds gGgshhhhHHHHHHHHHHHHHHHHHHHHHHHHHTTS --HHHHHHhhHhhhhhhhh
Similar 010----01111111111111111111111111111--01111111-0100000000
256ba ky
3mdda.1 latdavqvfggngfnteypveklmrdakiyqiyegtaqiqriiiarehigry
256ba_dssp hh
3mdda.1_ds hhhhhhhhtgggggbttsshhhhhhhhggggtsss-hhhhhhhhhhhhhhtt
Similar 00--------------------------------------------------
2acs srlllnNGAk mpILGLGTWK spPgqVTEAVKVAIDVGYRHIDca
1rbla.2 fqgpphgi qVERdllnkygrpMLGCTIKPklglsAknYGRAVYECLRGGLDFTKdd
2acs_dssp -eee-tTS-e eeSB-EE-TT --HhhHHHHHHHHHHHT--EEE--
1rbla.2_ds s---ss-h hHHHhhht--ss-EEE-B-SSss---HhhHHHHHHHHHHTT-SEEE--
Similar ----0000-01110------0011111111---001011111111111111111100
2acs hvyqnENEVGVAIQEKLreqVVkreeLFIVSKLwctyhEKGLVKGACQ
1rbla.2 eninsqpfqrwrdrFLFVADAIHKSQ aETg eiKGHYLNVt apTCEEMMKRAE
2acs_dssp gggt-HHHHHHHHHHHHhttSS-ggg-EEEEEE-ggg-SHHHHHHHHH
1rbla.2_ds tt-ssbttb-hhhhHHHHHHHHHHHH hHHs s--EEEEE-- -sSHHHHHHHHH
Similar ---------00000111111111111--0110-0011111110--001111111111
2acs KTlsdlklDYLDLYLIHWPTgfkpgkeffpldesgnvvpsdtniLDTWAA MEELVD
1rbla.2 FAk eLGMPIIMHDFLT agFTANTTlAKWCRD
2acs_dssp HHhhhht-S-BSEEEES-S--b--ss-ss-b-tt--b-b-s--hHHHHHH HHHHHH
1rbla.2_ds HHh hTT-SEEEEEHHH h-HHHHHHhHHHHHH
Similar 110----0111111111111----------------------00111111-111111
2acs EglVKAIGIS nfnHLQVEMILnkpglkykPAVNQIE cHPy
1rbla.2 N GVLLHIHramhavidrqrnhgihfRVLAKCLR lsgGDHLHSGtvVGkle
2acs_dssp TtsBS-EEEE s--HHHHHHHHt-tt--s---EEEEE -BTt
1rbla.2_ds H T-EEEEE-tthhhhhs-sssee-hHHHHHHHH hh--SEEE---sSSss-
Similar 1--1111111--------------00011111111-----0001111111-0110--
2acs ltqEKLIQYCQ skGIVVTAYsplgspdrpwakpe
1rbla.2 gdkastLGFVDLMRedhieadrsrgvfftqdwasmpGVLPVASg
2acs_dssp b--HHHHHHHH htT-EEEEEstt--tt-ss---s
1rbla.2_ds --hhhhHHHHHHHH-see--bgggtb-s-ee-tt----EEEEEs
Similar ---00011111111--------------------0011111110-------------
2acs dpslledprikaiaakhnkttaQVLIRFPMQ rNLVVIPk svTPERIA
1rbla.2 gihVWHMPALVEifgdDSVLQFgggtlghpwgNAPGAT
2acs_dssp ---stt-hhhhhhhhhhts-hhHHHHHHHHH tT-EE--b ---HHHHH
1rbla.2_ds s--GGGHHHHHHhh-sS-EEE-shhhhtstt-HHHHHH
Similar -------------------000111111111---01111110-------00111111
2acs ENFK VFD felSSQdmt tllsynRnwrvc
1rbla.2 ANRVaLEAcvqarnegrdLYReggdilreagkwspelaaaldlwkeikfefEt
2acs_dssp HHH- -SS ----HHhhh hhhtt-----s-
1rbla.2_ds HHHHhHHHhhhhhhht--HHHhhhhhhhhhhhh-hhhhhhhhhhtt-------
Similar 1111-111-------000111000---------------------00000010----
2acs allsctshkdypfhee
1rbla.2 mdk
2acs_dssp --gggttstt-stts-
1rbla.2_ds ss-
Similar -------------000
2btfa.1 dddIAALVVDNG sGMCKAGFAgddapRAVFPsivgrprhqgvmvgmgq
1vsd glgpLQIWQTDFTleprmaprsWLAVTVDTas saIVVTQ
2btfa.1_ds --sSS-EEEEE- sSEEEEEETt-ss-SEEEE--eee-ss----sss-s
1vsd_dssp --s---EEEEEEEe-gggtts-EEEEEEETtt --EEEEE
Similar -000111111111--------01111111100-0011111-----------------
2btfa.1 kdsyvgdeaqskrgiltlkYpiehgivtNWDDMEKIWHHTFyneLRVApeeHPVLLT
1vsd hgR vTSVAAQHHWATAI aVLGR pKAIKTD
2btfa.1_ds ---eeggggggggggseee-seettee--HHHHHHHHHHHHhttT---gggS-EEEE
1vsd_dssp esS --HHHHHHHHHHHH hHH-- -SEEE--
Similar -----------------001-------01111111111111--01111--0111111
2btfa.1 eaplnpkanREKMTQIMfETFNtPAMYVaiqavlslyas
1vsd ng scftSKSTREWL ARWG IAHTTgi pgnsqgqamveranrllkdkirvlae
2btfa.1_ds e-tt--hhhHHHHHHHHhHHH--SEEEEeehhhhhhhhh
1vsd_dssp s- hhhhSHHHHHHH HHHT -EEE--s tt-s-s-hhhhhhhhhhhhhhhhhhh
Similar 00---000011111111-1111-1111100-00000000------------------
2btfa.1
1vsd gdgfmkriptskqgellakamyalnh
2btfa.1_ds
1vsd_dssp htt-sss--hhhhhhhhhhhhhhhh-
Similar --------------------------
2fcr KIGIFFStstGNTTEVADFIGKTLGAKADAPIDVd dvtdPQALKDYDLLFLgap
2dlda.1 mtKVFAYAI rKDEEPFLNEWKEAHKDIDVDYTDKlltpetAKLAKGADGVVV
2fcr_dssp -EEEEE--ssSHHHHHHHHHHHHHGGGB---EEGg g-s-GGGGGG-SEEEEeee
2dlda.1_ds --EEEEES- -TTTHHHHHHHHHH-TT-EEE--SS---ttgGGGSTT-SEEEE
Similar --1111111--01111111111111111111111110-0000111111111111---
2fcr twntgadtersgtswdeflydklpeVDM kdLPVAIFglgdaegypdnfcdaiee
2dlda.1 yqqldy tadtlQALadagvTKMSLRn v
2fcr_dssp --stt-ss--s-sthhhhhhhtggg--- tt-EEEEEeee-ttt-ttsttthhhh
2dlda.1_ds --ss-b -hhhhHHHhhhh--EEE-Ss s
Similar -------------000000-00000111---001111110----------------0
2fcr iHDCf akqgAKPvgfsnpddydyeesksvrdgkflglPLdmvndqipmekrv
2dlda.1 gVDNidmdkakelgFQIt nvpVY
2fcr_dssp hHHHh hhtt-EEe--b-gggs--s--tteetteesseEEettt-ss-hhhhh
2dlda.1_ds --TTb-hhhhhhtt-B-b ----S
Similar 01110-----00001110---------------------00011-------------
2fcr agwveavvsetg
2dlda.1
2fcr_dssp hhhhhhhhhhht
2dlda.1_ds
Similar ------------
2hts arpaFVNKLWSMVndksnEKfihwstsgesivvpnrerfvQEVLPKyfkHSNFAS
1hcra grpraiNKHEQEQISr lleKGh prQQLAII fGIGVST
2hts_dssp ---hHHHHHHHHHh-gggTTt-ee-ttssseees-hhhhhHHTHHHh-tT--HHH
1hcra_dssp ----ss-THHHHHHHh hhhTT- -hHHHHHH tB--HHH
Similar --00001111111110-000110-----------------00111111--0111111
2hts FVRQlnmygwhKvqdvksgsnDSRwefenerh
1hcra LYRY fpAs siKKRm
2hts_dssp HHHHhhhttee----s-tt-----eeeees--
1hcra_dssp HHHH s--s -s----
Similar 1111-----0010------001110-------
2liga mggllfsslqhcqqgfvISNELRQQQSELTSTWDLMLQTRINLsrsaarmmmdasnq
1cgn xfakPEDAVKYRQSALTLMASHFGRMAPVVkgq
2liga_dssp ---ssssshhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhts--stt
1cgn_dssp --ssHHHHHHHHHHHHHHHHHHHHTTHHHHtts
Similar -------------000011111111111111111111111111000-----------
2liga qssaktdlLQNAKTTLAQAAAHYANFKNmtPLpam aeasANVDEK
1cgn apydAAQIKANVEVLKTLTALPWA aFGagteggdarpeiwsdaagfKQKQQA
2liga_dssp -s--s-thHHHHHHHHHHHHHHHHHHHHs---ggg hhhhHHHHHH
1cgn_dssp s---HHHHHHHHHHHHHHTTSGGG g--tt---ttb-thhhhthhhhHHHHHH
Similar ----000011111111111111111111-011000------------0000111111
2liga YQRYQAALAELIQFldngNMDAYFAqpTQGMQNALGEALGNYArvsenlyrqtf
1cgn FQDNIVKLSAAADA gDLDKLRA aFGDVGASCKACHDSYR
2liga_dssp HHHHHHHHHHHHHHhhtt-HHHHHHs-HHHHHHHHHHHHHHHHhhhhhhhhtt-
1cgn_dssp HHHHHHHHHHHHHH t-HHHHHH hHHHHHHHHHHHHHHHB
Similar 11111111111111---01111111-01111111111111111-----------
2naca.1 AKVLCVLyddpvdgypktyarddlpkidhypggqtlptpkaidftpgqlLgsvsG
1ofv akIGLFYGT qtgV tqT
2naca.1_ds -EEEEE-b---tt-s-s--s-s------b-tts-b----s--ss-tts--sbttT
1ofv_dssp --EEEEE-- sssH hhH
Similar --1111111---------------------------------------0001--001
2naca.1 E lGLRKYLEsngHTLvVTSDkdgpdsvfERELVDA DVVIsq pfwpa
1ofv IaeSIQQEFGgesIVD LNDIa nadASDLNAYdYLIIgcptwnvgelqsdweg
2naca.1_ds G gG-HHHHHhtt-EEeEES--ssttshhHHHHTT- SEEEeb ttb--
1ofv_dssp HhhHHHHHHTsttTEE EEEGg g--GGGGGG-sEEEEe--eetttee-hhhhh
Similar 1-01111111000111-11110----0001111111-111100---------00000
2naca.1 yL tPEriaKAknLKLALTAg igSDHV DLQSaidRNV
1ofv iYddlDS vNFqgKKVAYFGagdqvgysdnfqdamGILEekISSL gSQTvgywp
2naca.1_ds -B -HHhhhH-tt--EEEESs s--TTB -HHHhhhTT-
1ofv_dssp hGgggGG s--tt-EEEEEEe--ttttttstthhhHHHHhhHHHT t-EE---ee
Similar 01--011--0110011111110------------001111--1111--0111-----
2naca.1 tvaEVtycnstTLTAQARYaAGTREILECFFEgRPirdeyli
1ofv iegydfneskavrnnqfvGLa idEDNQPDLTkNRIKTWVSQLKSeFG
2naca.1_ds eeeE-tttth-SHHHHHHHhHHHHHHHHHHHHt----gggee
1ofv_dssp -tt---s--tteetteesSEe e-TTT-HHHHhHHHHHHHHHHHHhTT
Similar ---------------000110---00111111110111111111111011-------
2naca.1 vqggal
1ofv
2naca.1_ds eettee
1ofv_dssp
Similar ------
2phy mehvafgsedientlakmdDGqL DGL aFGAIQLDGDGNILQYnaaegditg
1acf swQTyVdtnlVGTgavTQAAILGLDGNTWATsa
2phy_dssp -----tt-tthhhhhtt--HHhH TT- sSEEEEEETT-BEEEE-hhhhhhh-
1acf_dssp -hHHhHhtttGGGts-SEEEEEETTS-EEEE-t
Similar -----------------001101----111--011111111111111100-------
2phy rdpkqvigknFfkdvapctdspefyGKFKeGVAs gn
1acf gfavT paq gtTLAG AFNnadairaggfdlagvhyvtlradd
2phy_dssp --hhhhttsbIiiii-ggg-sttthHHHHhHHHh t-
1acf_dssp t---- hhh hhHHHH HHH--hhhhhh-eeetteeeeeeeess
Similar ------00001----010-----001111-1110---------------------00
2phy LNTMFEytfdyqmtptkvKVHMKKalsGDSYWVFVKR
1acf RSIYGKk gssGVITVK tSKAILVGVYNekiqpgtaanvvekladyli
2phy_dssp -EEEEEeee-sss--eeeEEEEEE-ssTTEEEEEEEE
1acf_dssp SEEEEEe tteEEEEEE -SSEEEEEEE-tts-hhhhhhhhhhhhhhhh
Similar 1111110--------000111111--01111111111--------------------
2phy
1acf gqg
2phy_dssp
1acf_dssp ttt
Similar ---
2tmda.1 ardpkhdilfepiqigp ktlRNRFYQvPHCI gaGsdKPGFQSAhrsVKAEGG 1bgla.3 evriengllllngkpLLIRGV NRHEhhplhgQvmDEQTMVQdilLMKQNN 2tmda.1_ds ---gggggggs-eeett eeeSSSEEE----- s-Ttt-HHHHHHhhhHHHHTT 1bgla.3_ds -eeeetteeeettee--EEEE E----btttbT---HHHHHHhhhHHHHTT Similar ------00000000100-000111111-1111----001001111111000111111 2tmda.1 WAALNTEYcsinpesddthrlsariwdegdvrnlKAMTDEVHKYGALAGVELWYGga 1bgla.3 FNAVRCSHyp nhPLWYTLCDRYGLYVVDEANIEth 2tmda.1_ds -SEEEEEEeesstts--tts--ee-sshhhhhhhHHHHHHHHHTT-EEEEEEE--gg 1bgla.3_ds --EEE-TTs- --HHHHHHHHHHT-EEEEE-S-B-t Similar 1111111100----------------------0011111111111111111111100 2tmda.1 hapnmesratprgpsqyasefetlsyckemdlsDIAQ VQQFYVDAAKRSRDA gFD 1bgla.3 gm vpmnrltd dpRWLPaMSERVTRMVQRDRNHpsVI 2tmda.1_ds gs--ttt----eess--b-ssstt-b-ee--hhHHHH HHHHHHHHHHHHHHH t-S 1bgla.3_ds ts sstttttt -gGGHHhHHHHHHHHHHHHTT-ttEE Similar 00----00000000-----------------001111-111111111111111-011 2tmda.1 IVYVygahsYLplqflnpyynkrtdkyggslenrARFWLETLEKVKHAVgSDCAIAt 1bgla.3 IWSLg nESg hGANHDALYRWIKSVD PSRPVQ 2tmda.1_ds EEEEee-tt-Hhhhhh-ttt----sttssshhhhHHHHHHHHHHHHHHHtTTSEEEe 1bgla.3_ds EEE-- sS-- --HHHHHHHHHHHHH- TTS-EE Similar 11110---0110---------------------0111111111111111-111111- 2tmda.1 RFGvdtvygpgqieaevdgqkfvemadslVDMWDItigdiaewgedagpsrfyqqgh 1bgla.3 YEGgga dttaTDIICPmyarvde dqpf 2tmda.1_ds EEEee-ss-tts--ttthhhhhhhhhttt-SEEEEees-sttgggts--ttt--ttt 1bgla.3_ds --Gggs sstt-SSB--bs--ss- -b-- Similar 111000-------------------00001111110000000-----------0000 2tmda.1 tipwVK lVK qVSKKPVLgvgr ytdpEKMIEIvtkgyaDII GCAr 1bgla.3 pavpKWsikkWLslpGETRPLIlceyahamgnslggfAKYWQAfrqyprLQGgFVWd 2tmda.1_ds thhhHH hHH tT-SS-EEe-s- ---hHHHHHHhhtts-SBE EESh 1bgla.3_ds sss-B--hhhHTtstT--S-EEeeees---ss--tthHHHHHHhtt-ttEEEeEES- Similar 000011---011--011111110000-------0000111111000000111-1110 2tmda.1 p siadpflpqKveqg 1bgla.3 wvdqslikydengnpwsayggdfgdtpndrqfcmnglvfadrtphpalteakHqq 2tmda.1_ds h hhh-tthhhHhhht 1bgla.3_ds sb---eeee-tts-eeee-tttts-ss--gggg---seetttee-tthhhhhHht Similar 0------------------------------------------000000000100-- 2tmda.1 ry 1bgla.3 2tmda.1_ds -g 1bgla.3_ds Similar --
4at1b.1 gveaikrgTVI dHIPaqigFKLLsLFKltetdqritIGLnlpsgemgrkDLIkie
2fxb pkyTIVdkeTCI acGACG AAAp diydYDE dGIAyvt
4at1b.1_ds -----sseEEE eEE-ssshHHHHhHS-tt-sss-eeEEEee-sstts-eEEEeee
2fxb_dssp ---EEE-stT-- ----HH HH-t tteeEET tTEEeet
Similar -----000111--0111--001111-1110----0000111---------0111000
4at1b.1 ntfls edqvdqlalYAPQATVN riDNYE VVGksrpsl
2fxb lddnqgivevpdiliddmmdafeGCPTDSIKvadepFDGDpNKF
4at1b.1_ds t---- hhhhhhhttT-TT-EEE eeETTE EEEee----
2fxb_dssp tttsss-s---ggghhhhhhhhhT-TT--EEe-ss---S-tTS-
Similar 00000---------00000000011111111---001111-111------