% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1sry.ent 1srya.1 { A 1 _ to A 110 _ -0.88541 0.45880 0.07456 11.18083 0.44728 0.88466 -0.13167 22.14171 -0.12634 -0.08322 -0.98850 69.96021 } /disk3/pdb/pdb1abm.ent 1abma.1 { A 1 _ to A 83 _ -0.67736 -0.63591 0.36990 8.72363 0.73521 -0.56836 0.36931 16.00548 -0.02459 0.52211 0.85254 -39.85527 } % Reading block file... Blocfile read: Length: 118 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 118 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 110 % The alignment: >1srya.1 (cluster A) sequence >1abma.1 (cluster B) sequence >space >1srya.1_dssp (cluster A) secondary structure from DSSP >1abma.1_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * M - V - D - L H KK H- RH H- LS H- RL H- QP H- ED -- PL H- EP HS VY HS FD H- HY HG RG HG 0 0.00000 3.03161 0.17000 AA HG 0 0.01200 3.02828 0.32000 IL HG 0 0.03300 2.93590 0.53000 R H E H K T GE TT VP -T 0 0.05900 2.29421 0.79000 AH -T 0 0.30200 2.19721 3.22000 LI -S 0 0.26500 2.12213 2.85000 DN -- 1 0.56400 0.97119 5.84000 LA HH 1 0.92000 0.95028 9.40000 EQ HH 1 0.89300 1.03605 9.13000 AI HH 1 0.90800 0.79076 9.28000 LM HH 1 0.91800 0.73911 9.38000 LQ HH 1 0.90100 0.96667 9.21000 AL HH 1 0.89400 1.06965 9.14000 LH HH 1 0.84200 1.09282 8.62000 H H DS HH 1 0.56400 1.68338 5.84000 RK HT 1 0.68600 1.35295 7.06000 EH HH 1 0.89000 1.02293 9.10000 VH HH 1 0.91900 1.01999 9.39000 QA HH 1 0.88200 1.13367 9.02000 EA HH 1 0.86800 1.10521 8.88000 LY HH 1 0.92800 0.64535 9.48000 KV HH 1 0.94500 0.68742 9.65000 KN HH 1 0.93300 0.88232 9.53000 RN HH 1 0.94500 0.71253 9.65000 LL HH 1 0.94400 0.71635 9.64000 QN HH 1 0.93200 0.88671 9.52000 EV HH 1 0.94700 0.69467 9.67000 VT HH 1 0.94500 0.77709 9.65000 QE HH 1 0.94100 0.77396 9.61000 TE HH 1 0.94900 0.60885 9.69000 EK HH 1 0.94100 0.72146 9.61000 RY HH 1 0.94500 0.55413 9.65000 NQ HH 1 0.93200 0.75942 9.52000 QE HH 1 0.89600 0.93452 9.16000 VA HH 1 0.77800 1.27673 7.98000 AL HH 1 0.70100 1.54637 7.21000 KA HH 1 0.76900 1.48887 7.89000 RK HT 1 0.70800 1.60607 7.28000 V T P T K T A - P - P G E G E G K T E H AG HT 0 0.00000 3.37828 0.00000 LD H- 0 0.03600 2.05814 0.56000 IV HH 1 0.61500 1.70847 6.35000 AT HH 1 0.70400 1.63143 7.24000 RA HH 1 0.71900 1.55416 7.39000 GQ HH 1 0.74400 1.33857 7.64000 KI HH 1 0.83800 0.76298 8.58000 AA HH 1 0.79000 1.30806 8.10000 LL HH 1 0.79100 1.00687 8.11000 GQ HH 1 0.60900 1.52874 6.29000 EP HH 1 0.52100 1.79013 5.41000 EA HH 1 0.65400 1.51159 6.74000 AL HH 1 0.81800 1.06548 8.38000 KK HH 1 0.77700 1.36925 7.97000 RF HH 1 0.73400 1.52760 7.54000 LN HH 1 0.80100 1.41040 8.21000 EG HH 1 0.78000 1.47658 8.00000 EG HH 1 0.81300 1.42624 8.33000 AG HH 1 0.79100 1.49114 8.11000 LH HH 1 0.81100 1.40810 8.31000 RI HH 1 0.76000 1.51665 7.80000 EN HH 1 0.74700 1.50543 7.67000 KH HH 1 0.81800 1.26269 8.38000 ES HH 1 0.79900 1.36485 8.19000 AI HH 1 0.77600 1.49583 7.96000 RF HH 1 0.71700 1.51064 7.37000 LW HH 1 0.62100 1.68307 6.41000 ET HH 1 0.59000 1.82185 6.10000 AN HH 1 0.44600 2.05435 4.66000 LL HB LS H- L T Q T V - P - L - P - P - W - P T G T A S *