% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1le4.ent 1le4 { ALL 0.03655 -0.36316 -0.93101 90.60575 0.96206 -0.23927 0.13115 -12.44443 -0.27037 -0.90050 0.34062 1.95417 } /disk3/pdb/pdb1bbh.ent 1bbha { CHAIN A -0.91212 -0.35461 0.20545 50.90983 0.17205 0.12370 0.97730 -60.93292 -0.37197 0.92677 -0.05176 -47.90135 } % Reading block file... Blocfile read: Length: 166 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 166 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 149 % The alignment: >1le4 (cluster A) sequence >1bbha (cluster B) sequence >space >1le4_dssp (cluster A) secondary structure from DSSP >1bbha_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * A - G - L - S - P H E H E H Q H I H QE -H 1 0.57800 1.84599 5.98000 RT HH 1 0.47000 1.96217 4.90000 WR HH 1 0.61200 1.72699 6.32000 EQ HH 1 0.75900 1.43376 7.79000 LA HH 1 0.64300 1.69643 6.63000 AG HH 1 0.55200 1.80627 5.72000 LY HH 1 0.68200 1.53766 7.02000 GE HH 1 0.84400 1.26719 8.64000 RF HH 1 0.78000 1.33907 8.00000 FM HH 1 0.62600 1.69939 6.46000 WG HH 1 0.67100 1.67867 6.91000 DW HH 1 0.70500 1.55188 7.25000 YN HH 1 0.72100 1.53411 7.41000 LM HH 1 0.63900 1.71501 6.59000 RG HH 1 0.61300 1.77268 6.33000 WK HH 1 0.67200 1.61962 6.92000 VI HH 1 0.51800 1.88027 5.38000 QK HH 0 0.39400 2.09344 4.14000 TA HH 1 0.43900 2.05801 4.59000 LN -H SL -H EE HH QG HS VE H- QY H- EN H- EA HH LA TH LQ SH SV SH SE SH QA HH 0 0.24700 2.26282 2.67000 VA HH 0 0.33700 2.21139 3.57000 TA HH 0 0.21900 2.38760 2.39000 QN HH 0 0.25600 2.25011 2.76000 EV HH 1 0.53400 1.71331 5.54000 LI HH 1 0.58300 1.71941 6.03000 RA HH 0 0.28400 2.22820 3.04000 AA HH 0 0.32800 2.13391 3.48000 LI HH 1 0.49100 1.83301 5.11000 MA HH N T DS HS EG H- 0 0.00300 2.67585 0.23000 TM HG 0 0.29200 2.08822 3.12000 MG HG 1 0.45100 2.01893 4.71000 KA HG 1 0.45100 2.10091 4.71000 EL HG 1 0.50500 2.00310 5.25000 LY HS 1 0.53600 1.93389 5.56000 K H A H YG H- 0 0.04500 2.45053 0.65000 KP HG 0 0.35800 1.87812 3.78000 SG HG 0 0.14100 2.17580 1.61000 ET HG 0 0.03100 2.67072 0.51000 LD HG EK TS EN T- QV TB LG -T TD -T P - V T A T E T E T TV HB RK H- AT H- RR H- LV HB SK H- KP HG 0 0.00000 3.07258 0.00000 EE HG 0 0.11300 2.21308 1.33000 LF HG 0 0.22600 2.11408 2.46000 QF HT 0 0.31900 1.86921 3.39000 AQ HT 0 0.27000 2.27427 2.90000 AN H- 0 0.26600 2.33271 2.86000 QM HH 0 0.18900 2.51349 2.09000 AE HH 0 0.16100 2.57450 1.81000 RD HH 0 0.26100 2.38378 2.81000 LV HH 0 0.25900 2.39245 2.79000 GG HH 0 0.16600 2.54866 1.86000 AK HH 0 0.26500 2.33949 2.85000 DI HH 0 0.40000 2.09225 4.20000 MA HH 0 0.28100 2.31516 3.01000 ER HH 0 0.33200 2.21862 3.52000 DE HH 1 0.49000 1.82168 5.10000 VF HH 1 0.50500 1.90093 5.25000 RV HH 1 0.49000 1.96413 5.10000 GG HH 1 0.59400 1.55909 6.14000 RA HH 1 0.61400 1.46401 6.34000 LA HH 1 0.43800 1.99206 4.58000 VN HH 1 0.62500 1.70523 6.45000 QT HH 1 0.58400 1.68309 6.04000 YL HH 0 0.35400 2.15881 3.74000 RA HH 0 0.26000 2.34703 2.80000 GE HH 0 0.29400 2.25291 3.14000 EV HH 0 0.16500 2.44038 1.85000 VA HH 0 0.04400 2.81418 0.64000 QA HT 0 0.03100 2.85919 0.51000 A H M H L T G T QT ST SG -T 0 0.00000 3.01055 0.00000 TE -- 0 0.12600 1.88996 1.46000 EA HH 0 0.37000 2.12749 3.90000 EE HH 1 0.44800 1.94323 4.68000 LA HH 1 0.63100 1.41807 6.51000 RV HH 1 0.60100 1.69918 6.21000 VK HH 1 0.59800 1.80097 6.18000 RT HH 1 0.75000 1.39779 7.70000 LA HH 1 0.74600 1.39842 7.66000 AF HH 1 0.59700 1.79382 6.17000 SG HH 1 0.71900 1.59793 7.39000 HD HH 1 0.78700 1.41271 8.07000 LV HH 1 0.71200 1.63060 7.32000 RG HH 1 0.67900 1.63891 6.99000 KA HH 1 0.82700 1.15331 8.47000 LA HH 1 0.84200 1.29973 8.62000 RC HH 1 0.75300 1.51088 7.73000 KK HH 1 0.76900 1.12796 7.89000 RS HH 1 0.65500 1.32937 6.75000 LC HH 1 0.50900 1.88844 5.29000 LH HH 1 0.69900 1.68385 7.19000 E H RK HH 0 0.23700 2.17049 2.57000 DY HH 1 0.48600 1.76312 5.06000 AR HB 1 0.47600 1.99670 4.96000 DA H- D H L H Q H K H R H L H A H V T *